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P47412 (RL6_MYCGE) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L6
Gene names
Name:rplF
Synonyms:rpl6
Ordered Locus Names:MG166
OrganismMycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) [Complete proteome] [HAMAP]
Taxonomic identifier243273 [NCBI]
Taxonomic lineageBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma

Protein attributes

Sequence length184 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01365

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 18418450S ribosomal protein L6 HAMAP-Rule MF_01365
PRO_0000131059

Sequences

Sequence LengthMass (Da)Tools
P47412 [UniParc].

Last modified February 1, 1996. Version 1.
Checksum: 5460B09C1E4D14A1

FASTA18420,523
        10         20         30         40         50         60 
MSKIGNRSIK IDPSKVSLMQ TTTLLTIKGP LGENTIKLPK NLPLKFVVEN DTIKVTNNNN 

        70         80         90        100        110        120 
LKQTKILHGT FNALVNNAVI GVTKGFEKKL ILVGVGYRAN VEGQFLNLQL GYSHPIKELI 

       130        140        150        160        170        180 
PNQLTVKVEK NTEITISGIK KELVGQFATE IRKWRKPEPY KGKGVLYFNE VIVRKQGKTA 


EGKK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
L43967 Genomic DNA. Translation: AAC71384.1.
PIRD64218.
RefSeqNP_072829.1. NC_000908.2.

3D structure databases

ProteinModelPortalP47412.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING243273.MG_166.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC71384; AAC71384; MG_166.
GeneID875542.
KEGGmge:MG_166.
PATRIC20009764. VBIMycGen98045_0188.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0097.
KOK02933.
OMAISIPYSR.
OrthoDBEOG67DPRD.
ProtClustDBPRK05498.

Enzyme and pathway databases

BioCycMGEN243273:GH2R-175-MONOMER.

Family and domain databases

Gene3D3.90.930.12. 2 hits.
HAMAPMF_01365_B. Ribosomal_L6_B.
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERPTHR11655. PTHR11655. 1 hit.
PTHR11655:SF6. PTHR11655:SF6. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSPR00059. RIBOSOMALL6.
SUPFAMSSF56053. SSF56053. 2 hits.
TIGRFAMsTIGR03654. L6_bact. 1 hit.
PROSITEPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL6_MYCGE
AccessionPrimary (citable) accession number: P47412
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: February 19, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Mycoplasma genitalium

Mycoplasma genitalium (strain G-37): entries and gene names