ID IML1_YEAST Reviewed; 1584 AA. AC P47170; D6VWV7; DT 01-FEB-1996, integrated into UniProtKB/Swiss-Prot. DT 01-FEB-1996, sequence version 1. DT 27-MAR-2024, entry version 171. DE RecName: Full=Vacuolar membrane-associated protein IML1; DE AltName: Full=Increased minichromosome loss protein 1; DE AltName: Full=SEH-associated protein 1; GN Name=IML1; Synonyms=SEA1; OrderedLocusNames=YJR138W; ORFNames=J2129; OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. OX NCBI_TaxID=559292; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 204508 / S288c; RX PubMed=8641269; DOI=10.1002/j.1460-2075.1996.tb00557.x; RA Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., RA Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., RA Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., RA Heumann K., Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., RA Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., RA Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., RA Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., RA Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., RA Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., RA To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., RA von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.; RT "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."; RL EMBO J. 15:2031-2049(1996). RN [2] RP GENOME REANNOTATION. RC STRAIN=ATCC 204508 / S288c; RX PubMed=24374639; DOI=10.1534/g3.113.008995; RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.; RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now."; RL G3 (Bethesda) 4:389-398(2014). RN [3] RP SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. RX PubMed=14562095; DOI=10.1038/nature02026; RA Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., RA Weissman J.S., O'Shea E.K.; RT "Global analysis of protein localization in budding yeast."; RL Nature 425:686-691(2003). RN [4] RP LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. RX PubMed=14562106; DOI=10.1038/nature02046; RA Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., RA O'Shea E.K., Weissman J.S.; RT "Global analysis of protein expression in yeast."; RL Nature 425:737-741(2003). RN [5] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-680, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC STRAIN=ADR376; RX PubMed=17330950; DOI=10.1021/pr060559j; RA Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., RA Elias J.E., Gygi S.P.; RT "Large-scale phosphorylation analysis of alpha-factor-arrested RT Saccharomyces cerevisiae."; RL J. Proteome Res. 6:1190-1197(2007). RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-680 AND SER-737, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=18407956; DOI=10.1074/mcp.m700468-mcp200; RA Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.; RT "A multidimensional chromatography technology for in-depth phosphoproteome RT analysis."; RL Mol. Cell. Proteomics 7:1389-1396(2008). RN [7] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-680, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19779198; DOI=10.1126/science.1172867; RA Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.; RT "Global analysis of Cdk1 substrate phosphorylation sites provides insights RT into evolution."; RL Science 325:1682-1686(2009). RN [8] RP SUBCELLULAR LOCATION, IDENTIFICATION IN THE SEA COMPLEX, AND FUNCTION. RX PubMed=21454883; DOI=10.1074/mcp.m110.006478; RA Dokudovskaya S., Waharte F., Schlessinger A., Pieper U., Devos D.P., RA Cristea I.M., Williams R., Salamero J., Chait B.T., Sali A., Field M.C., RA Rout M.P., Dargemont C.; RT "A conserved coatomer-related complex containing Sec13 and Seh1 dynamically RT associates with the vacuole in Saccharomyces cerevisiae."; RL Mol. Cell. Proteomics 10:M110.006478.1-M110.006478.17(2011). CC -!- FUNCTION: Component of the SEA complex which coats the vacuolar CC membrane and is involved in intracellular trafficking, autophagy, CC response to nitrogen starvation, and amino acid biogenesis. CC {ECO:0000269|PubMed:21454883}. CC -!- SUBUNIT: Component of the SEA complex composed of at least IML1/SEA1, CC RTC1/SEA2, MTC5/SEA3, NPR2, NPR3, SEA4, SEC13 and SEH1. CC {ECO:0000269|PubMed:21454883}. CC -!- SUBCELLULAR LOCATION: Vacuole membrane {ECO:0000269|PubMed:14562095, CC ECO:0000269|PubMed:21454883}; Peripheral membrane protein CC {ECO:0000269|PubMed:14562095, ECO:0000269|PubMed:21454883}. CC -!- MISCELLANEOUS: Present with 279 molecules/cell in log phase SD medium. CC {ECO:0000269|PubMed:14562106}. CC -!- SIMILARITY: Belongs to the IML1 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; Z49638; CAA89670.1; -; Genomic_DNA. DR EMBL; BK006943; DAA08923.1; -; Genomic_DNA. DR PIR; S57161; S57161. DR RefSeq; NP_012672.1; NM_001181796.2. DR PDB; 8ADL; EM; 2.95 A; W/X=1-1584. DR PDB; 8AE6; EM; 2.70 A; W=1-1584. DR PDBsum; 8ADL; -. DR PDBsum; 8AE6; -. DR AlphaFoldDB; P47170; -. DR SMR; P47170; -. DR BioGRID; 33894; 240. DR ComplexPortal; CPX-3231; SEA complex. DR DIP; DIP-2589N; -. DR IntAct; P47170; 29. DR MINT; P47170; -. DR STRING; 4932.YJR138W; -. DR GlyGen; P47170; 2 sites, 1 O-linked glycan (2 sites). DR iPTMnet; P47170; -. DR MaxQB; P47170; -. DR PaxDb; 4932-YJR138W; -. DR PeptideAtlas; P47170; -. DR EnsemblFungi; YJR138W_mRNA; YJR138W; YJR138W. DR GeneID; 853603; -. DR KEGG; sce:YJR138W; -. DR AGR; SGD:S000003899; -. DR SGD; S000003899; IML1. DR VEuPathDB; FungiDB:YJR138W; -. DR eggNOG; KOG3572; Eukaryota. DR GeneTree; ENSGT00390000016559; -. DR HOGENOM; CLU_000935_1_1_1; -. DR InParanoid; P47170; -. DR OMA; SWMNATP; -. DR OrthoDB; 946033at2759; -. DR BioCyc; YEAST:G3O-31754-MONOMER; -. DR BioGRID-ORCS; 853603; 1 hit in 10 CRISPR screens. DR PRO; PR:P47170; -. DR Proteomes; UP000002311; Chromosome X. DR RNAct; P47170; Protein. DR GO; GO:0000329; C:fungal-type vacuole membrane; HDA:SGD. DR GO; GO:1990130; C:GATOR1 complex; IDA:SGD. DR GO; GO:0035859; C:Seh1-associated complex; IDA:SGD. DR GO; GO:0005774; C:vacuolar membrane; NAS:ComplexPortal. DR GO; GO:0005096; F:GTPase activator activity; IDA:SGD. DR GO; GO:0035556; P:intracellular signal transduction; IEA:InterPro. DR GO; GO:0051058; P:negative regulation of small GTPase mediated signal transduction; IGI:SGD. DR GO; GO:0032007; P:negative regulation of TOR signaling; IMP:SGD. DR GO; GO:1904262; P:negative regulation of TORC1 signaling; IMP:SGD. DR GO; GO:0010508; P:positive regulation of autophagy; IMP:SGD. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW. DR GO; GO:2000785; P:regulation of autophagosome assembly; IMP:SGD. DR GO; GO:1903432; P:regulation of TORC1 signaling; IDA:ComplexPortal. DR CDD; cd04449; DEP_DEPDC5-like; 1. DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1. DR InterPro; IPR000591; DEP_dom. DR InterPro; IPR027244; IML1. DR InterPro; IPR048255; IML1_N. DR InterPro; IPR036388; WH-like_DNA-bd_sf. DR InterPro; IPR036390; WH_DNA-bd_sf. DR PANTHER; PTHR13179; DEP DOMAIN CONTAINING PROTEIN 5; 1. DR PANTHER; PTHR13179:SF8; GATOR COMPLEX PROTEIN DEPDC5; 1. DR Pfam; PF00610; DEP; 1. DR Pfam; PF12257; IML1; 1. DR SMART; SM00049; DEP; 1. DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1. DR PROSITE; PS50186; DEP; 1. PE 1: Evidence at protein level; KW 3D-structure; Membrane; Phosphoprotein; Protein transport; KW Reference proteome; Transport; Vacuole. FT CHAIN 1..1584 FT /note="Vacuolar membrane-associated protein IML1" FT /id="PRO_0000203123" FT DOMAIN 1198..1273 FT /note="DEP" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00066" FT REGION 1..37 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 49..89 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 732..752 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1286..1312 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 11..37 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 49..64 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 734..752 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1291..1312 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 680 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:17330950, FT ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198" FT MOD_RES 737 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:18407956" FT STRAND 102..104 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 107..109 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 111..113 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 117..119 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 122..124 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 133..137 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 140..142 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 145..148 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 151..155 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 161..166 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 173..177 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 178..183 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 191..195 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 200..202 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 205..211 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 218..227 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 228..230 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 231..234 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 242..244 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 252..254 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 260..264 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 269..276 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 278..285 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 287..289 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 294..296 FT /evidence="ECO:0007829|PDB:8ADL" FT HELIX 299..305 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 308..318 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 323..333 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 339..341 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 349..363 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 364..366 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 367..386 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 387..389 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 393..397 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 409..417 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 418..420 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 423..425 FT /evidence="ECO:0007829|PDB:8ADL" FT STRAND 434..442 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 444..447 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 450..460 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 467..473 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 480..486 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 492..504 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 523..526 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 532..534 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 553..562 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 848..852 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 860..865 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 870..873 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 887..890 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 897..899 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 905..908 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 913..919 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 923..925 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 926..929 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 932..946 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 949..951 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 955..960 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 986..989 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 991..998 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1005..1011 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1020..1022 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1028..1030 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 1044..1046 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1054..1062 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1076..1084 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1091..1093 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1105..1121 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 1128..1131 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1152..1158 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1340..1342 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1344..1351 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1357..1359 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1362..1371 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1377..1385 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1388..1404 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1407..1412 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1417..1422 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1430..1432 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 1438..1440 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1447..1452 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1456..1464 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1467..1469 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1475..1477 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1483..1488 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1496..1511 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1513..1515 FT /evidence="ECO:0007829|PDB:8AE6" FT STRAND 1517..1521 FT /evidence="ECO:0007829|PDB:8AE6" FT TURN 1523..1525 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1551..1559 FT /evidence="ECO:0007829|PDB:8AE6" FT HELIX 1562..1577 FT /evidence="ECO:0007829|PDB:8AE6" SQ SEQUENCE 1584 AA; 181949 MW; BB8E73FF5B70CCDF CRC64; MFAKLHGKKQ RPISSINSQT PRTSNTTHAN SISLSSGNLI VGSNRNLRQK KEQFGSQQRA SGRKLISNKE NDDNVNNGGD NNYDNGERVH RHHIPGLKIK AYQAELGYHE SRFSENLVML NLVEFPDIKP GDLVELKTYH KNPSASNGDK KIYFIAKDFD GETKRRAKTS NVSILSGQLQ TLLDLPSRSR IWIKLKPNKF DLQADVVEFN IKDCLLNRGD MWVLSSKLVD TCVFMDQRLA FLDSIRGTIK GIYRNGKKIV SGYIGEQTRI IFRSESARLI FLIQITDEMW NFEETGEQLF QKMVNSFFPK IFKKWKDVDT HHTITIAFAI SMDLSDTSFK DLTPGESLKN SQDYFRIVVD QVSIIHWVDI METLREEFME IRKDLLNKQT DKGYSVANGR FSPVIKSNFL ELVNFATTIL TDPFKQLDLR HTTTHVMIIS PGSGLFDVDY SLLRLTGKKL LSLEMTMDLI CLSKAPLHIV PLFRYRDFEN KLHHCVPLWL SVFFWNDHDK KSNSEWTPRC KIYDLQMMGI TENELIREVD VEYLQLNKKV KSLSEFMNDY DKNAFEVKIL CAGSNTKQSK KLNSKFDTVF ENDVVVKARK IPATATTTHG NTKFIWRGPK VALPAIKDIQ KPNVIPDLSI KTIEASFYDD CNTTNDKIST PTTSNNDNLE MNDSLVSVRS ADNQNTSLAL DSLKGLSKRN SLKDFTQRVI TKFISNIDTS KNKKIKSTLL RDDVDNSPLG SNTPLPSSES KISGLKLQQK GLADENVISK RGNLIIKKNL SIFGLPSNEI MSGSPSSYLG SSHTRTSSKL SNMSDKAAFI TEGQKSKHDD SNTYSLTQQL KHRISETWVD IKSPSIPVSS EFANELLPIR WKDVWPKYVA RKYSKWRSFT TPAELPITIS DFPSKDDFDR NFIFRNHSVT LNTDQEQYNQ TYKDLLRDMI YMRLLTGFQI CVGRQVEKIE LSRESGESET VVNKYLDFNQ NDAFKLYLMI DSEIHRITCS SSGIIDVERY LRKDEANLFD QVPSYIPLVK TRYESSFRDA MIDPLHVKRE SLNWNQIDQV LAGYGDNLID RKWHGFRAKY VVLPTDIPPN TYSMVINGKS ETLNPEEIRV EGLRRLIGSI TRSRLRTEKE KKGRKTKREE IQPEVMFYTG PLYNFINEQQ TSLESSAINF KDSIFVNDNN LLNRNVELSK LAYQIQRGED RITLVNRKWH WKKHEKCFVG SEMVNWLIRN FSDIDTREDA IKYGQKVMKE GLFVHVLNKH NFLDGHYFYQ FSPEYVMDTN KLEKTNSHRS TLSDPKQMLR KASTGSSNDP SAMTPFSSVV PAISASNASV ADAKEPSRPI LMLSNSLVID VDPAGKSSKQ ESCTVHYDRV HNPDHCFHIR LEWLTTTPKL IDDLVGNWSR LCERYGLKMI EIPWEELCTI PSVNPFHSFV EIKLAINPWE DPEFKDRELF AKSKFYYHVY LLKASGFLLD NRASKFLQNQ DIEFDIMYSW GKPQFKYVQY IHHTGAYVAE LRENGCLFLA PNNIYISRVN PGNIIGKIHS ASSSSLDAQK VILNFKSTCL DYQKLRSIFL DAKEMWITGK IVED //