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Protein

UPF0508 protein YJR030C

Gene

YJR030C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  1. hexose catabolic process Source: SGD
Complete GO annotation...

Enzyme and pathway databases

BioCyciYEAST:G3O-31668-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0508 protein YJR030C
Gene namesi
Ordered Locus Names:YJR030C
ORF Names:J1575L
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome X

Organism-specific databases

CYGDiYJR030c.
SGDiS000003791. YJR030C.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 745745UPF0508 protein YJR030CPRO_0000203090Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP47101.

Interactioni

Protein-protein interaction databases

BioGridi33783. 5 interactions.
DIPiDIP-5695N.
IntActiP47101. 3 interactions.
MINTiMINT-480071.

Structurei

3D structure databases

ProteinModelPortaliP47101.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi680 – 73657Ser-richAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0508 family.Curated

Phylogenomic databases

eggNOGiNOG47681.
GeneTreeiENSGT00530000069267.
InParanoidiP47101.
OMAiIMSERAT.
OrthoDBiEOG7XH71B.

Sequencei

Sequence statusi: Complete.

P47101-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MELFNKEEAS FETLLKRLLV VCESHSRYHG SSLDPMVKVG HEMRKISGYL
60 70 80 90 100
RCILRKHAAN HDDMSLTQSI VNSYKSLFKD AQILDLYHNL LFGCMHLLLD
110 120 130 140 150
ANMSYFRMDS QKLFAVLLFK VYYKLRDIFY VTNEVRLGSL ISAFVYKFKS
160 170 180 190 200
CYDFISCNSL KYGSVRDVIS GEVSLINLPP IDSNKVINRA YYRLDVKKLA
210 220 230 240 250
INNKLVEILE LDNGEIAIFE VLSEKMPYTL QTIDNLFQSL ALGNHDLMNV
260 270 280 290 300
GRSLLFRPFR SGDLDLIRLD DSGAKLKVPI NNSIVLRLTC KDPIQWQEYW
310 320 330 340 350
KHVIRKLFDS TATKEYKRSG SKISQQVYVR SNNPDYTSPK RNDDMPISSV
360 370 380 390 400
KISDTIHNGR TLHRSIPLPG SLSSLIETSN EYPDEESLSI MSERATVSED
410 420 430 440 450
SDLDTSLKDI ESLSCEKLIE LDKSIQVPLS PKYMDTPTLK NIRTASQTFS
460 470 480 490 500
LESVSPELIE SVASEIDDSE SIISEDGKDK RDKDLFDPDI DFYKPTLYRR
510 520 530 540 550
KSSSLLSIFS KNKKNLTIDI PKNHSRSLFS LPGNQQSVTP VSATPHDDNV
560 570 580 590 600
DETYVSFPLS INTSGGAVYF ENDSVKVSLW NGKSWVPLSK DMLCLSLILS
610 620 630 640 650
GDNETLLIVY KDFEKEKCKL VVKLEPTWKY NRSTAQDVQL RIPSSDFKAS
660 670 680 690 700
VFGTLHDLTL SIRCAQAAKL VNVLQYQLQS SQTSSLSPST TTGTLSTVSS
710 720 730 740
SSCFSRNVTR SSTENSELAN MKDSSEYISS SLLLSSVKVR QLRNM
Length:745
Mass (Da):84,290
Last modified:November 2, 2010 - v3
Checksum:iB287BC72FCE6A211
GO

Sequence cautioni

The sequence CAA60727.1 differs from that shown.Contains PCR fragment of strain VP102-10A.Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti742 – 7454LRNM → HVKTKADVWKPSRVGYTDIF SQEYKGIVVAIKFVICSDAE GTLYPREYNSRLHDIKRLGR TGLSFTDKKEAYLLEFKNQD VVDHVHKLILPFNTSWQSN in strain: VP102-10A.

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87297 Genomic DNA. Translation: CAA60723.1.
X87298 Genomic DNA. Translation: CAA60727.1. Sequence problems.
Z49530 Genomic DNA. Translation: CAA89557.1.
BK006943 Genomic DNA. Translation: DAA08819.1.
PIRiS57048.
RefSeqiNP_012564.3. NM_001181688.3.

Genome annotation databases

EnsemblFungiiYJR030C; YJR030C; YJR030C.
GeneIDi853487.
KEGGisce:YJR030C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87297 Genomic DNA. Translation: CAA60723.1.
X87298 Genomic DNA. Translation: CAA60727.1. Sequence problems.
Z49530 Genomic DNA. Translation: CAA89557.1.
BK006943 Genomic DNA. Translation: DAA08819.1.
PIRiS57048.
RefSeqiNP_012564.3. NM_001181688.3.

3D structure databases

ProteinModelPortaliP47101.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi33783. 5 interactions.
DIPiDIP-5695N.
IntActiP47101. 3 interactions.
MINTiMINT-480071.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYJR030C; YJR030C; YJR030C.
GeneIDi853487.
KEGGisce:YJR030C.

Organism-specific databases

CYGDiYJR030c.
SGDiS000003791. YJR030C.

Phylogenomic databases

eggNOGiNOG47681.
GeneTreeiENSGT00530000069267.
InParanoidiP47101.
OMAiIMSERAT.
OrthoDBiEOG7XH71B.

Enzyme and pathway databases

BioCyciYEAST:G3O-31668-MONOMER.

Miscellaneous databases

NextBioi974110.

Gene expression databases

GenevestigatoriP47101.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence of 24.3 kb from chromosome X reveals five complete open reading frames, all of which correspond to new genes, and a tandem insertion of a Ty1 transposon."
    Zagulski M., Babinska B., Gromadka R., Migdalski A., Rytka J., Sulicka J., Herbert C.J.
    Yeast 11:1179-1186(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c and VP102-10A.
  2. "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
    Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K.
    , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
    EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.

Entry informationi

Entry nameiYJ00_YEAST
AccessioniPrimary (citable) accession number: P47101
Secondary accession number(s): D6VWK3, P87321, Q05848
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: November 2, 2010
Last modified: January 7, 2015
This is version 77 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Caution

This is a truncated version of an UPF0508 family protein. Strain S288c has a tandem insertion of a Ty1 transposon in position 742, which disrupts the gene coding for this protein and produces two ORFs YJR030C and YJR025C-A. A contiguous sequence of this protein can be found in strain YJM789 (AC A6ZPZ1).Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome X
    Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.