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P47101 (YJ00_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
UPF0508 protein YJR030C
Gene names
Ordered Locus Names:YJR030C
ORF Names:J1575L
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length745 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the UPF0508 family.

Caution

This is a truncated version of an UPF0508 family protein. Strain S288c has a tandem insertion of a Ty1 transposon in position 742, which disrupts the gene coding for this protein and produces two ORFs YJR030C and YJR025C-A. A contiguous sequence of this protein can be found in strain YJM789 (AC A6ZPZ1).

Sequence caution

The sequence CAA60727.1 differs from that shown. Reason: Contains PCR fragment of strain VP102-10A.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 745745UPF0508 protein YJR030C
PRO_0000203090

Regions

Compositional bias680 – 73657Ser-rich

Natural variations

Natural variant742 – 7454LRNM → HVKTKADVWKPSRVGYTDIF SQEYKGIVVAIKFVICSDAE GTLYPREYNSRLHDIKRLGR TGLSFTDKKEAYLLEFKNQD VVDHVHKLILPFNTSWQSN in strain: VP102-10A.

Sequences

Sequence LengthMass (Da)Tools
P47101 [UniParc].

Last modified November 2, 2010. Version 3.
Checksum: B287BC72FCE6A211

FASTA74584,290
        10         20         30         40         50         60 
MELFNKEEAS FETLLKRLLV VCESHSRYHG SSLDPMVKVG HEMRKISGYL RCILRKHAAN 

        70         80         90        100        110        120 
HDDMSLTQSI VNSYKSLFKD AQILDLYHNL LFGCMHLLLD ANMSYFRMDS QKLFAVLLFK 

       130        140        150        160        170        180 
VYYKLRDIFY VTNEVRLGSL ISAFVYKFKS CYDFISCNSL KYGSVRDVIS GEVSLINLPP 

       190        200        210        220        230        240 
IDSNKVINRA YYRLDVKKLA INNKLVEILE LDNGEIAIFE VLSEKMPYTL QTIDNLFQSL 

       250        260        270        280        290        300 
ALGNHDLMNV GRSLLFRPFR SGDLDLIRLD DSGAKLKVPI NNSIVLRLTC KDPIQWQEYW 

       310        320        330        340        350        360 
KHVIRKLFDS TATKEYKRSG SKISQQVYVR SNNPDYTSPK RNDDMPISSV KISDTIHNGR 

       370        380        390        400        410        420 
TLHRSIPLPG SLSSLIETSN EYPDEESLSI MSERATVSED SDLDTSLKDI ESLSCEKLIE 

       430        440        450        460        470        480 
LDKSIQVPLS PKYMDTPTLK NIRTASQTFS LESVSPELIE SVASEIDDSE SIISEDGKDK 

       490        500        510        520        530        540 
RDKDLFDPDI DFYKPTLYRR KSSSLLSIFS KNKKNLTIDI PKNHSRSLFS LPGNQQSVTP 

       550        560        570        580        590        600 
VSATPHDDNV DETYVSFPLS INTSGGAVYF ENDSVKVSLW NGKSWVPLSK DMLCLSLILS 

       610        620        630        640        650        660 
GDNETLLIVY KDFEKEKCKL VVKLEPTWKY NRSTAQDVQL RIPSSDFKAS VFGTLHDLTL 

       670        680        690        700        710        720 
SIRCAQAAKL VNVLQYQLQS SQTSSLSPST TTGTLSTVSS SSCFSRNVTR SSTENSELAN 

       730        740 
MKDSSEYISS SLLLSSVKVR QLRNM 

« Hide

References

« Hide 'large scale' references
[1]"The sequence of 24.3 kb from chromosome X reveals five complete open reading frames, all of which correspond to new genes, and a tandem insertion of a Ty1 transposon."
Zagulski M., Babinska B., Gromadka R., Migdalski A., Rytka J., Sulicka J., Herbert C.J.
Yeast 11:1179-1186(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 204508 / S288c and VP102-10A.
[2]"Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K. expand/collapse author list , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[3]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X87297 Genomic DNA. Translation: CAA60723.1.
X87298 Genomic DNA. Translation: CAA60727.1. Sequence problems.
Z49530 Genomic DNA. Translation: CAA89557.1.
BK006943 Genomic DNA. Translation: DAA08819.1.
PIRS57048.
RefSeqNP_012564.3. NM_001181688.3.

3D structure databases

ProteinModelPortalP47101.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid33783. 5 interactions.
DIPDIP-5695N.
IntActP47101. 3 interactions.
MINTMINT-480071.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYJR030C; YJR030C; YJR030C.
GeneID853487.
KEGGsce:YJR030C.

Organism-specific databases

CYGDYJR030c.
SGDS000003791. YJR030C.

Phylogenomic databases

eggNOGNOG47681.
GeneTreeENSGT00530000069267.
OMAESPREAN.
OrthoDBEOG7XH71B.

Enzyme and pathway databases

BioCycYEAST:G3O-31668-MONOMER.

Gene expression databases

GenevestigatorP47101.

Family and domain databases

ProtoNetSearch...

Other

NextBio974110.

Entry information

Entry nameYJ00_YEAST
AccessionPrimary (citable) accession number: P47101
Secondary accession number(s): D6VWK3, P87321, Q05848
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: November 2, 2010
Last modified: February 19, 2014
This is version 73 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome X

Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families