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P47101

- YJ00_YEAST

UniProt

P47101 - YJ00_YEAST

Protein

UPF0508 protein YJR030C

Gene

YJR030C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 3 (02 Nov 2010)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. hexose catabolic process Source: SGD

    Enzyme and pathway databases

    BioCyciYEAST:G3O-31668-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0508 protein YJR030C
    Gene namesi
    Ordered Locus Names:YJR030C
    ORF Names:J1575L
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome X

    Organism-specific databases

    CYGDiYJR030c.
    SGDiS000003791. YJR030C.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 745745UPF0508 protein YJR030CPRO_0000203090Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriP47101.

    Interactioni

    Protein-protein interaction databases

    BioGridi33783. 5 interactions.
    DIPiDIP-5695N.
    IntActiP47101. 3 interactions.
    MINTiMINT-480071.

    Structurei

    3D structure databases

    ProteinModelPortaliP47101.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi680 – 73657Ser-richAdd
    BLAST

    Sequence similaritiesi

    Belongs to the UPF0508 family.Curated

    Phylogenomic databases

    eggNOGiNOG47681.
    GeneTreeiENSGT00530000069267.
    OMAiESPREAN.
    OrthoDBiEOG7XH71B.

    Sequencei

    Sequence statusi: Complete.

    P47101-1 [UniParc]FASTAAdd to Basket

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    MELFNKEEAS FETLLKRLLV VCESHSRYHG SSLDPMVKVG HEMRKISGYL    50
    RCILRKHAAN HDDMSLTQSI VNSYKSLFKD AQILDLYHNL LFGCMHLLLD 100
    ANMSYFRMDS QKLFAVLLFK VYYKLRDIFY VTNEVRLGSL ISAFVYKFKS 150
    CYDFISCNSL KYGSVRDVIS GEVSLINLPP IDSNKVINRA YYRLDVKKLA 200
    INNKLVEILE LDNGEIAIFE VLSEKMPYTL QTIDNLFQSL ALGNHDLMNV 250
    GRSLLFRPFR SGDLDLIRLD DSGAKLKVPI NNSIVLRLTC KDPIQWQEYW 300
    KHVIRKLFDS TATKEYKRSG SKISQQVYVR SNNPDYTSPK RNDDMPISSV 350
    KISDTIHNGR TLHRSIPLPG SLSSLIETSN EYPDEESLSI MSERATVSED 400
    SDLDTSLKDI ESLSCEKLIE LDKSIQVPLS PKYMDTPTLK NIRTASQTFS 450
    LESVSPELIE SVASEIDDSE SIISEDGKDK RDKDLFDPDI DFYKPTLYRR 500
    KSSSLLSIFS KNKKNLTIDI PKNHSRSLFS LPGNQQSVTP VSATPHDDNV 550
    DETYVSFPLS INTSGGAVYF ENDSVKVSLW NGKSWVPLSK DMLCLSLILS 600
    GDNETLLIVY KDFEKEKCKL VVKLEPTWKY NRSTAQDVQL RIPSSDFKAS 650
    VFGTLHDLTL SIRCAQAAKL VNVLQYQLQS SQTSSLSPST TTGTLSTVSS 700
    SSCFSRNVTR SSTENSELAN MKDSSEYISS SLLLSSVKVR QLRNM 745
    Length:745
    Mass (Da):84,290
    Last modified:November 2, 2010 - v3
    Checksum:iB287BC72FCE6A211
    GO

    Sequence cautioni

    The sequence CAA60727.1 differs from that shown. Reason: Contains PCR fragment of strain VP102-10A.

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti742 – 7454LRNM → HVKTKADVWKPSRVGYTDIF SQEYKGIVVAIKFVICSDAE GTLYPREYNSRLHDIKRLGR TGLSFTDKKEAYLLEFKNQD VVDHVHKLILPFNTSWQSN in strain: VP102-10A.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X87297 Genomic DNA. Translation: CAA60723.1.
    X87298 Genomic DNA. Translation: CAA60727.1. Sequence problems.
    Z49530 Genomic DNA. Translation: CAA89557.1.
    BK006943 Genomic DNA. Translation: DAA08819.1.
    PIRiS57048.
    RefSeqiNP_012564.3. NM_001181688.3.

    Genome annotation databases

    EnsemblFungiiYJR030C; YJR030C; YJR030C.
    GeneIDi853487.
    KEGGisce:YJR030C.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X87297 Genomic DNA. Translation: CAA60723.1 .
    X87298 Genomic DNA. Translation: CAA60727.1 . Sequence problems.
    Z49530 Genomic DNA. Translation: CAA89557.1 .
    BK006943 Genomic DNA. Translation: DAA08819.1 .
    PIRi S57048.
    RefSeqi NP_012564.3. NM_001181688.3.

    3D structure databases

    ProteinModelPortali P47101.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 33783. 5 interactions.
    DIPi DIP-5695N.
    IntActi P47101. 3 interactions.
    MINTi MINT-480071.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YJR030C ; YJR030C ; YJR030C .
    GeneIDi 853487.
    KEGGi sce:YJR030C.

    Organism-specific databases

    CYGDi YJR030c.
    SGDi S000003791. YJR030C.

    Phylogenomic databases

    eggNOGi NOG47681.
    GeneTreei ENSGT00530000069267.
    OMAi ESPREAN.
    OrthoDBi EOG7XH71B.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-31668-MONOMER.

    Miscellaneous databases

    NextBioi 974110.

    Gene expression databases

    Genevestigatori P47101.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "The sequence of 24.3 kb from chromosome X reveals five complete open reading frames, all of which correspond to new genes, and a tandem insertion of a Ty1 transposon."
      Zagulski M., Babinska B., Gromadka R., Migdalski A., Rytka J., Sulicka J., Herbert C.J.
      Yeast 11:1179-1186(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204508 / S288c and VP102-10A.
    2. "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
      Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K.
      , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
      EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    3. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.

    Entry informationi

    Entry nameiYJ00_YEAST
    AccessioniPrimary (citable) accession number: P47101
    Secondary accession number(s): D6VWK3, P87321, Q05848
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1996
    Last sequence update: November 2, 2010
    Last modified: October 1, 2014
    This is version 75 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Caution

    This is a truncated version of an UPF0508 family protein. Strain S288c has a tandem insertion of a Ty1 transposon in position 742, which disrupts the gene coding for this protein and produces two ORFs YJR030C and YJR025C-A. A contiguous sequence of this protein can be found in strain YJM789 (AC A6ZPZ1).Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries
    3. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    4. Yeast chromosome X
      Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

    External Data

    Dasty 3