SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P47023

- YJ41A_YEAST

UniProt

P47023 - YJ41A_YEAST

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Transposon Ty4-J Gag polyprotein
Gene
TY4A-J, YJLWTy4-1 GAG, YJL114W, J0775
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome By similarity.

GO - Molecular functioni

  1. RNA binding Source: SGD
  2. zinc ion binding Source: InterPro

GO - Biological processi

  1. transposition, RNA-mediated Source: SGD
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Transposon Ty4-J Gag polyprotein
Short name:
TY4A
Short name:
Transposon Ty4 protein A
Gene namesi
Name:TY4A-J
Synonyms:YJLWTy4-1 GAG
Ordered Locus Names:YJL114W
ORF Names:J0775
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome X

Organism-specific databases

CYGDiYJL114w.
SGDiS000003650. YJL114W.

Subcellular locationi

GO - Cellular componenti

  1. retrotransposon nucleocapsid Source: SGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 414414Transposon Ty4-J Gag polyprotein
PRO_0000203501Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP47023.

Interactioni

Protein-protein interaction databases

BioGridi33641. 6 interactions.
DIPiDIP-7219N.
IntActiP47023. 7 interactions.
MINTiMINT-390812.
STRINGi4932.YJL114W.

Structurei

3D structure databases

ProteinModelPortaliP47023.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili39 – 11577 Reviewed prediction
Add
BLAST

Keywords - Domaini

Coiled coil

Phylogenomic databases

HOGENOMiHOG000155564.
OrthoDBiEOG7G1VGM.

Family and domain databases

InterProiIPR001878. Znf_CCHC.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by ribosomal frameshifting. Align

Note: The Gag-Pol polyprotein is generated by a +1 ribosomal frameshift.

Isoform Transposon Ty4-J Gag polyprotein (identifier: P47023-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MATPVRGETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVRQ    50
YQRNLNRFKT ILNGLKAEEE KLSEADDIQM LAEKLLKLGE TIDKVENRIV 100
DLVEKIQLLE TNENNNILHE HIDATGTYYL FDTLTSTNKR FYPKDCVFDY 150
RTNNVENIPI LLNNFKKFIK KYQFDDVFEN DIIEIDPREN EILCKIIKEG 200
LGESLDIMNT NTTDIFRIID GLKKQNIEVC MVEMSELEPG EKVLVDTTCR 250
NSALLMNKLQ KLVLMEKWIF SKCCQDCPNL KDYLQEAIMG TLHESLRNSV 300
KQRLYNIPHD VGIDHEEFLI NTVIETVIDL SPIADDQIEN SCMYCKSVFH 350
CSINCKKKPN RELRPDSTNF SKTYYLQGAQ RQQPLKSSAK RTKVLEQDTK 400
KVEQSVQQQK TGNY 414

Note: Produced by conventional translation.

Length:414
Mass (Da):48,035
Last modified:February 1, 1996 - v1
Checksum:i541F3767BE5F8275
GO
Isoform Transposon Ty4-J Gag-Pol polyprotein (identifier: P47024-1) [UniParc]FASTAAdd to Basket

The sequence of this isoform can be found in the external entry P47024.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.

Note: Produced by +1 ribosomal frameshifting between codon Leu-363 and Gly-364 of the YJL114W ORF.

Length:1,803
Mass (Da):207,710
GO

Sequence cautioni

The sequence DAA08687.2 differs from that shown. Reason: Frameshift at positions 226 and 240.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X67284 Genomic DNA. No translation available.
Z49389 Genomic DNA. Translation: CAA89408.1.
BK006943 Genomic DNA. Translation: DAA08687.2. Frameshift.
PIRiJC1482.
S31261.
RefSeqiNP_012422.2. NM_001181547.2.

Genome annotation databases

GeneIDi853329.
KEGGisce:YJL114W.

Keywords - Coding sequence diversityi

Ribosomal frameshifting

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X67284 Genomic DNA. No translation available.
Z49389 Genomic DNA. Translation: CAA89408.1 .
BK006943 Genomic DNA. Translation: DAA08687.2 . Frameshift.
PIRi JC1482.
S31261.
RefSeqi NP_012422.2. NM_001181547.2.

3D structure databases

ProteinModelPortali P47023.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 33641. 6 interactions.
DIPi DIP-7219N.
IntActi P47023. 7 interactions.
MINTi MINT-390812.
STRINGi 4932.YJL114W.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 853329.
KEGGi sce:YJL114W.

Organism-specific databases

CYGDi YJL114w.
SGDi S000003650. YJL114W.

Phylogenomic databases

HOGENOMi HOG000155564.
OrthoDBi EOG7G1VGM.

Miscellaneous databases

NextBioi 973692.

Gene expression databases

Genevestigatori P47023.

Family and domain databases

InterProi IPR001878. Znf_CCHC.
[Graphical view ]
SMARTi SM00343. ZnF_C2HC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Ty4, a new retrotransposon from Saccharomyces cerevisiae, flanked by tau-elements."
    Janetzky B., Lehle L.
    J. Biol. Chem. 267:19798-19805(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. "Sequencing analysis of a 40.2 kb fragment of yeast chromosome X reveals 19 open reading frames including URA2 (5' end), TRK1, PBS2, SPT10, GCD14, RPE1, PHO86, NCA3, ASF1, CCT7, GZF3, two tRNA genes, three remnant delta elements and a Ty4 transposon."
    Cziepluch C., Kordes E., Pujol A., Jauniaux J.-C.
    Yeast 12:1471-1474(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 96604 / S288c / FY1679.
  3. "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
    Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K.
    , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
    EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION, SEQUENCE REVISION TO 226 AND 240.
    Strain: ATCC 204508 / S288c.
  5. "Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence."
    Kim J.M., Vanguri S., Boeke J.D., Gabriel A., Voytas D.F.
    Genome Res. 8:464-478(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE.
  6. "Happy together: the life and times of Ty retrotransposons and their hosts."
    Lesage P., Todeschini A.L.
    Cytogenet. Genome Res. 110:70-90(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVIEW.

Entry informationi

Entry nameiYJ41A_YEAST
AccessioniPrimary (citable) accession number: P47023
Secondary accession number(s): D6VW71
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: June 11, 2014
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Retrotransposons are mobile genetic entities that are able to replicate via an RNA intermediate and a reverse transcription step. In contrast to retroviruses, retrotransposons are non-infectious, lack an envelope and remain intracellular. Ty4 retrotransposons belong to the copia elements (pseudoviridae).

Keywords - Technical termi

Complete proteome, Reference proteome, Transposable element

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome X
    Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

External Data

Dasty 3

Similar proteinsi