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P47010 (IRC9_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative uncharacterized protein IRC9
Alternative name(s):
Increased recombination centers protein 9
Gene names
Name:IRC9
Ordered Locus Names:YJL142C
ORF Names:J0650
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length130 AA.
Sequence statusComplete.
Protein existenceUncertain

General annotation (Comments)

Subcellular location

Membrane; Multi-pass membrane protein Potential.

Caution

Product of a dubious gene prediction. Partially overlaps YAK1.

Ontologies

Keywords
   Cellular componentMembrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processmitotic recombination

Inferred from mutant phenotype PubMed 18085829. Source: SGD

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 130130Putative uncharacterized protein IRC9
PRO_0000203035

Regions

Transmembrane25 – 4521Helical; Potential
Transmembrane50 – 7021Helical; Potential
Transmembrane83 – 10321Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P47010 [UniParc].

Last modified February 1, 1996. Version 1.
Checksum: BE43ACF3EF051D47

FASTA13014,844
        10         20         30         40         50         60 
MTMQKASKVN MEVRTTLVTM QATTMSIILA LPLVVLIAST LVLSVKGRRI HLATSPIILL 

        70         80         90        100        110        120 
LLILFKKGQQ ARSINFTLSK NKSLFCLTFL NYPFHFITAW CHNDILNKYE FCLFLIFLIR 

       130 
IVITINKVTL 

« Hide

References

« Hide 'large scale' references
[1]"Sequence analysis of a 40.7 kb segment from the left arm of yeast chromosome X reveals 14 known genes and 13 new open reading frames including homologues of genes clustered on the right arm of chromosome XI."
Katsoulou C., Tzermia M., Tavernarakis N., Alexandraki D.
Yeast 12:787-797(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 96604 / S288c / FY1679.
[2]"Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K. expand/collapse author list , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[3]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X87371 Genomic DNA. Translation: CAA60813.1.
Z49417 Genomic DNA. Translation: CAA89436.1.
BK006943 Genomic DNA. No translation available.
PIRS55171.

3D structure databases

ProteinModelPortalP47010.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-5308N.
IntActP47010. 1 interaction.
MINTMINT-515270.
STRING4932.YJL142C.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYJL142C; YJL142C; YJL142C.

Organism-specific databases

SGDS000003678. IRC9.

Phylogenomic databases

OrthoDBEOG789CS6.

Gene expression databases

GenevestigatorP47010.

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameIRC9_YEAST
AccessionPrimary (citable) accession number: P47010
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: February 19, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome X

Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD