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Protein

Protein YhgF

Gene

yhgF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • nucleobase-containing compound metabolic process Source: InterPro
  • response to ionizing radiation Source: EcoCyc

Keywordsi

Molecular functionRNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7746-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YhgF
Gene namesi
Name:yhgF
Ordered Locus Names:b3407, JW3370
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi

Organism-specific databases

EcoGeneiEG12932 yhgF

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002151041 – 773Protein YhgFAdd BLAST773

Proteomic databases

EPDiP46837
PaxDbiP46837
PRIDEiP46837

Interactioni

Protein-protein interaction databases

BioGridi4261725, 54 interactors
DIPiDIP-12337N
IntActiP46837, 10 interactors
STRINGi316385.ECDH10B_3582

Structurei

3D structure databases

ProteinModelPortaliP46837
SMRiP46837
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini651 – 720S1 motifPROSITE-ProRule annotationAdd BLAST70

Phylogenomic databases

eggNOGiENOG4105BZM Bacteria
COG2183 LUCA
HOGENOMiHOG000270497
InParanoidiP46837
KOiK06959
OMAiGFLRIRD
PhylomeDBiP46837

Family and domain databases

Gene3Di1.10.10.650, 1 hit
1.10.3500.10, 2 hits
3.30.420.140, 1 hit
InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR012337 RNaseH-like_sf
IPR010994 RuvA_2-like
IPR022967 S1_dom
IPR003029 S1_domain
IPR023323 Tex-like_dom_sf
IPR023319 Tex-like_HTH_dom_sf
IPR018974 Tex-like_N
IPR032639 Tex_YqgF
IPR006641 YqgF/RNaseH-like_dom
IPR037027 YqgF/RNaseH-like_dom_sf
PfamiView protein in Pfam
PF00575 S1, 1 hit
PF09371 Tex_N, 1 hit
PF16921 Tex_YqgF, 1 hit
SMARTiView protein in SMART
SM00316 S1, 1 hit
SM00732 YqgFc, 1 hit
SUPFAMiSSF47781 SSF47781, 2 hits
SSF50249 SSF50249, 1 hit
SSF53098 SSF53098, 1 hit
PROSITEiView protein in PROSITE
PS50126 S1, 1 hit

Sequencei

Sequence statusi: Complete.

P46837-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMNDSFCRII AGEIQARPEQ VDAAVRLLDE GNTVPFIARY RKEITGGLDD
60 70 80 90 100
TQLRNLETRL SYLRELEERR QAILKSISEQ GKLTDDLAKA INATLSKTEL
110 120 130 140 150
EDLYLPYKPK RRTRGQIAIE AGLEPLADLL WSDPSHTPEV AAAQYVYADK
160 170 180 190 200
GVADTKAALD GARYILMERF AEDAALLAKV RDYLWKNAHL VSTVVSGKEE
210 220 230 240 250
EGAKFRDYFD HHEPLSTVPS HRALAMFRGR NEGVLQLSLN ADPQFDEPPK
260 270 280 290 300
ESYCEQIIMD HLGLRLNNAP ADSWRKGVVS WTWRIKVLMH LETELMGTVR
310 320 330 340 350
ERAEDEAINV FARNLHDLLM AAPAGLRATM GLDPGLRTGV KVAVVDATGK
360 370 380 390 400
LVATDTIYPH TGQAAKAAMT VAALCEKHNV ELVAIGNGTA SRETERFYLD
410 420 430 440 450
VQKQFPKVTA QKVIVSEAGA SVYSASELAA QEFPDLDVSL RGAVSIARRL
460 470 480 490 500
QDPLAELVKI DPKSIGVGQY QHDVSQTQLA RKLDAVVEDC VNAVGVDLNT
510 520 530 540 550
ASVPLLTRVA GLTRMMAQNI VAWRDENGQF QNRQQLLKVS RLGPKAFEQC
560 570 580 590 600
AGFLRINHGD NPLDASTVHP EAYPVVERIL AATQQALKDL MGNSSELRNL
610 620 630 640 650
KASDFTDEKF GVPTVTDIIK ELEKPGRDPR PEFKTAQFAD GVETMNDLQP
660 670 680 690 700
GMILEGAVTN VTNFGAFVDI GVHQDGLVHI SSLSNKFVED PHTVVKAGDI
710 720 730 740 750
VKVKVLEVDL QRKRIALTMR LDEQPGETNA RRGGGNERPQ NNRPAAKPRG
760 770
REAQPAGNSA MMDALAAAMG KKR
Length:773
Mass (Da):85,120
Last modified:July 15, 1999 - v3
Checksum:iEA54D9ED952A8229
GO

Sequence cautioni

The sequence AAA58204 differs from that shown. Wrong choice of frame.Curated
The sequence AAA58205 differs from that shown. Reason: Frameshift at positions 12 and 66.Curated
The sequence AAA58205 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti754 – 755QP → HA in AAA58205 (PubMed:9278503).Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA Translation: AAA58204.1 Sequence problems.
U18997 Genomic DNA Translation: AAA58205.1 Sequence problems.
U00096 Genomic DNA Translation: AAC76432.2
AP009048 Genomic DNA Translation: BAE77884.1
PIRiB65136
RefSeqiNP_417866.4, NC_000913.3
WP_000980727.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76432; AAC76432; b3407
BAE77884; BAE77884; BAE77884
GeneIDi947911
KEGGiecj:JW3370
eco:b3407
PATRICifig|1411691.4.peg.3322

Entry informationi

Entry nameiYHGF_ECOLI
AccessioniPrimary (citable) accession number: P46837
Secondary accession number(s): P76689, Q2M772
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: July 15, 1999
Last modified: March 28, 2018
This is version 131 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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