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Protein

40S ribosomal protein S15a

Gene

rps15a

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DDI-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DDI-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DDI-72689. Formation of a pool of free 40S subunits.
R-DDI-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-DDI-72702. Ribosomal scanning and start codon recognition.
R-DDI-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DDI-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DDI-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S15a
Alternative name(s):
Ribosomal protein S24
Gene namesi
Name:rps15a
Synonyms:rps24
ORF Names:DDB_G0276457
OrganismiDictyostelium discoideum (Slime mold)
Taxonomic identifieri44689 [NCBI]
Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
Proteomesi
  • UP000002195 Componentsi: Chromosome 2, Unassembled WGS sequence

Organism-specific databases

dictyBaseiDDB_G0276457. rps15a.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 13012940S ribosomal protein S15aPRO_0000126608Add
BLAST

Proteomic databases

PaxDbiP46793.
PRIDEiP46793.

Interactioni

Protein-protein interaction databases

STRINGi44689.DDB0185069.

Structurei

3D structure databases

ProteinModelPortaliP46793.
SMRiP46793. Positions 4-130.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8P family.Curated

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
InParanoidiP46793.
KOiK02957.
OMAiTHEVTPA.
PhylomeDBiP46793.

Family and domain databases

InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P46793-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRISVLNDC LNSIVNAERQ GKRQVLVRPS SKVIVKFLEV MMKKRYIGEF
60 70 80 90 100
EIVDDHRSGK IVIDLIGRIN KCGVISPRFD VTLDEIEKWA SYLLPSRQFG
110 120 130
HIVLTTSLGI MDHNEAKTRH TGGKLLGFFY
Length:130
Mass (Da):14,846
Last modified:December 4, 2007 - v3
Checksum:iFA47B638E4D64F8F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti12 – 121N → Y in AAA70102 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U27539 mRNA. Translation: AAA70102.1.
AAFI02000015 Genomic DNA. Translation: EAL69182.1.
RefSeqiXP_643091.1. XM_637999.1.

Genome annotation databases

EnsemblProtistsiDDB0185069; DDB0185069; DDB_G0276457.
GeneIDi8620495.
KEGGiddi:DDB_G0276457.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U27539 mRNA. Translation: AAA70102.1.
AAFI02000015 Genomic DNA. Translation: EAL69182.1.
RefSeqiXP_643091.1. XM_637999.1.

3D structure databases

ProteinModelPortaliP46793.
SMRiP46793. Positions 4-130.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi44689.DDB0185069.

Proteomic databases

PaxDbiP46793.
PRIDEiP46793.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiDDB0185069; DDB0185069; DDB_G0276457.
GeneIDi8620495.
KEGGiddi:DDB_G0276457.

Organism-specific databases

dictyBaseiDDB_G0276457. rps15a.

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
InParanoidiP46793.
KOiK02957.
OMAiTHEVTPA.
PhylomeDBiP46793.

Enzyme and pathway databases

ReactomeiR-DDI-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DDI-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DDI-72689. Formation of a pool of free 40S subunits.
R-DDI-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-DDI-72702. Ribosomal scanning and start codon recognition.
R-DDI-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DDI-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DDI-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP46793.

Family and domain databases

InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Primary sequence and developmental regulation of Dictyostelium ribosomal protein S24."
    Jho E., Kopachik W.
    Submitted (MAY-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: AX3.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AX4.
  3. "The genome of the social amoeba Dictyostelium discoideum."
    Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., Lehmann R., Hamlin N.
    , Davies R., Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N., Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N., Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D., Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T., Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A., Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A., Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y., Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C., Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R., Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.
    Nature 435:43-57(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AX4.

Entry informationi

Entry nameiRS15A_DICDI
AccessioniPrimary (citable) accession number: P46793
Secondary accession number(s): Q551M8, Q86HE3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: December 4, 2007
Last modified: December 9, 2015
This is version 88 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.