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P46777

- RL5_HUMAN

UniProt

P46777 - RL5_HUMAN

Protein

60S ribosomal protein L5

Gene

RPL5

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 141 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    Required for rRNA maturation and formation of the 60S ribosomal subunits. This protein binds 5S RNA.1 Publication

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. poly(A) RNA binding Source: UniProtKB
    3. protein binding Source: UniProtKB
    4. RNA binding Source: ProtInc
    5. structural constituent of ribosome Source: UniProtKB

    GO - Biological processi

    1. cellular protein metabolic process Source: Reactome
    2. gene expression Source: Reactome
    3. mRNA metabolic process Source: Reactome
    4. nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Source: Reactome
    5. ribosomal large subunit biogenesis Source: UniProtKB
    6. RNA metabolic process Source: Reactome
    7. rRNA processing Source: UniProtKB
    8. SRP-dependent cotranslational protein targeting to membrane Source: Reactome
    9. translation Source: UniProtKB
    10. translational elongation Source: Reactome
    11. translational initiation Source: Reactome
    12. translational termination Source: Reactome
    13. viral life cycle Source: Reactome
    14. viral process Source: Reactome
    15. viral transcription Source: Reactome

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    ReactomeiREACT_115902. SRP-dependent cotranslational protein targeting to membrane.
    REACT_1404. Peptide chain elongation.
    REACT_1797. Formation of a pool of free 40S subunits.
    REACT_1986. Eukaryotic Translation Termination.
    REACT_2085. GTP hydrolysis and joining of the 60S ribosomal subunit.
    REACT_75768. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_75822. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_79. L13a-mediated translational silencing of Ceruloplasmin expression.
    REACT_9491. Viral mRNA Translation.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L5
    Gene namesi
    Name:RPL5
    ORF Names:MSTP030
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 1

    Organism-specific databases

    HGNCiHGNC:10360. RPL5.

    Subcellular locationi

    Cytoplasm 1 Publication. Nucleusnucleolus 1 Publication

    GO - Cellular componenti

    1. cytoplasm Source: HPA
    2. cytosol Source: Reactome
    3. cytosolic large ribosomal subunit Source: UniProtKB
    4. extracellular vesicular exosome Source: UniProt
    5. membrane Source: UniProtKB
    6. nucleolus Source: HPA
    7. nucleus Source: UniProtKB
    8. ribonucleoprotein complex Source: MGI

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    Pathology & Biotechi

    Involvement in diseasei

    Diamond-Blackfan anemia 6 (DBA6) [MIM:612561]: A form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies.2 Publications
    Note: The disease is caused by mutations affecting the gene represented in this entry.
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti140 – 1401G → S in DBA6. 1 Publication
    VAR_055450
    Natural varianti285 – 2851A → V in DBA6. 1 Publication
    VAR_055451

    Keywords - Diseasei

    Diamond-Blackfan anemia, Disease mutation

    Organism-specific databases

    MIMi612561. phenotype.
    Orphaneti124. Blackfan-Diamond anemia.
    PharmGKBiPA34755.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed2 Publications
    Chaini2 – 29729660S ribosomal protein L5PRO_0000131431Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei2 – 21N-acetylglycine1 Publication
    Modified residuei5 – 51N6-acetyllysine1 Publication
    Modified residuei48 – 481N6-acetyllysine1 Publication
    Modified residuei220 – 2201N6-acetyllysineBy similarity
    Modified residuei272 – 2721Phosphoserine1 Publication

    Keywords - PTMi

    Acetylation, Phosphoprotein

    Proteomic databases

    MaxQBiP46777.
    PaxDbiP46777.
    PRIDEiP46777.

    PTM databases

    PhosphoSiteiP46777.

    Expressioni

    Gene expression databases

    ArrayExpressiP46777.
    BgeeiP46777.
    CleanExiHS_RPL5.
    GenevestigatoriP46777.

    Organism-specific databases

    HPAiHPA043717.
    HPA054444.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    DCCP431467EBI-358018,EBI-1222919
    DccQ631554EBI-358018,EBI-1798965From a different organism.
    MDM2Q009875EBI-358018,EBI-389668

    Protein-protein interaction databases

    BioGridi112045. 157 interactions.
    DIPiDIP-31152N.
    IntActiP46777. 24 interactions.
    MINTiMINT-1034099.
    STRINGi9606.ENSP00000359345.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3J3Belectron microscopy5.00D1-297[»]
    ProteinModelPortaliP46777.
    SMRiP46777. Positions 9-297.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L18P family.Curated

    Phylogenomic databases

    eggNOGiCOG0256.
    HOVERGENiHBG009347.
    InParanoidiP46777.
    KOiK02932.
    OMAiVICAAYS.
    OrthoDBiEOG7VB2FW.
    PhylomeDBiP46777.
    TreeFamiTF300044.

    Family and domain databases

    HAMAPiMF_01337_A. Ribosomal_L18_A.
    InterProiIPR005485. Rbsml_L5_euk/L18_arc.
    IPR025607. Rbsml_L5e/L18P_C.
    IPR005484. Ribosomal_L18/L5.
    [Graphical view]
    PANTHERiPTHR23410. PTHR23410. 1 hit.
    PfamiPF14204. Ribosomal_L18_c. 1 hit.
    PF00861. Ribosomal_L18p. 1 hit.
    [Graphical view]
    PRINTSiPR00058. RIBOSOMALL5.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P46777-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGFVKVVKNK AYFKRYQVKF RRRREGKTDY YARKRLVIQD KNKYNTPKYR    50
    MIVRVTNRDI ICQIAYARIE GDMIVCAAYA HELPKYGVKV GLTNYAAAYC 100
    TGLLLARRLL NRFGMDKIYE GQVEVTGDEY NVESIDGQPG AFTCYLDAGL 150
    ARTTTGNKVF GALKGAVDGG LSIPHSTKRF PGYDSESKEF NAEVHRKHIM 200
    GQNVADYMRY LMEEDEDAYK KQFSQYIKNS VTPDMMEEMY KKAHAAIREN 250
    PVYEKKPKKE VKKKRWNRPK MSLAQKKDRV AQKKASFLRA QERAAES 297
    Length:297
    Mass (Da):34,363
    Last modified:January 23, 2007 - v3
    Checksum:i07CA9FBA842BD2A3
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti78 – 781A → R in AAA85654. (PubMed:7772601)Curated
    Sequence conflicti176 – 1761S → R(PubMed:7937132)Curated
    Sequence conflicti264 – 2641K → E in BAD96324. 1 PublicationCurated

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti140 – 1401G → S in DBA6. 1 Publication
    VAR_055450
    Natural varianti210 – 2101Y → C.1 Publication
    Corresponds to variant rs11540832 [ dbSNP | Ensembl ].
    VAR_052009
    Natural varianti285 – 2851A → V in DBA6. 1 Publication
    VAR_055451

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U14966 mRNA. Translation: AAA85654.1.
    AF113210 mRNA. Translation: AAG39281.1.
    AK222604 mRNA. Translation: BAD96324.1.
    AL162740 Genomic DNA. Translation: CAI22505.1.
    BC109370 mRNA. Translation: AAI09371.1.
    U76609 mRNA. Translation: AAB18361.1.
    Z35312 Genomic DNA. No translation available.
    CCDSiCCDS741.1.
    PIRiS55912.
    RefSeqiNP_000960.2. NM_000969.3.
    UniGeneiHs.532359.

    Genome annotation databases

    EnsembliENST00000370321; ENSP00000359345; ENSG00000122406.
    GeneIDi6125.
    KEGGihsa:6125.
    UCSCiuc001doz.3. human.

    Polymorphism databases

    DMDMi81175191.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Web resourcesi

    Diamond-Blackfan Anemia mutation database

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U14966 mRNA. Translation: AAA85654.1 .
    AF113210 mRNA. Translation: AAG39281.1 .
    AK222604 mRNA. Translation: BAD96324.1 .
    AL162740 Genomic DNA. Translation: CAI22505.1 .
    BC109370 mRNA. Translation: AAI09371.1 .
    U76609 mRNA. Translation: AAB18361.1 .
    Z35312 Genomic DNA. No translation available.
    CCDSi CCDS741.1.
    PIRi S55912.
    RefSeqi NP_000960.2. NM_000969.3.
    UniGenei Hs.532359.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3J3B electron microscopy 5.00 D 1-297 [» ]
    ProteinModelPortali P46777.
    SMRi P46777. Positions 9-297.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 112045. 157 interactions.
    DIPi DIP-31152N.
    IntActi P46777. 24 interactions.
    MINTi MINT-1034099.
    STRINGi 9606.ENSP00000359345.

    PTM databases

    PhosphoSitei P46777.

    Polymorphism databases

    DMDMi 81175191.

    Proteomic databases

    MaxQBi P46777.
    PaxDbi P46777.
    PRIDEi P46777.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000370321 ; ENSP00000359345 ; ENSG00000122406 .
    GeneIDi 6125.
    KEGGi hsa:6125.
    UCSCi uc001doz.3. human.

    Organism-specific databases

    CTDi 6125.
    GeneCardsi GC01P093297.
    GeneReviewsi RPL5.
    HGNCi HGNC:10360. RPL5.
    HPAi HPA043717.
    HPA054444.
    MIMi 603634. gene.
    612561. phenotype.
    neXtProti NX_P46777.
    Orphaneti 124. Blackfan-Diamond anemia.
    PharmGKBi PA34755.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi COG0256.
    HOVERGENi HBG009347.
    InParanoidi P46777.
    KOi K02932.
    OMAi VICAAYS.
    OrthoDBi EOG7VB2FW.
    PhylomeDBi P46777.
    TreeFami TF300044.

    Enzyme and pathway databases

    Reactomei REACT_115902. SRP-dependent cotranslational protein targeting to membrane.
    REACT_1404. Peptide chain elongation.
    REACT_1797. Formation of a pool of free 40S subunits.
    REACT_1986. Eukaryotic Translation Termination.
    REACT_2085. GTP hydrolysis and joining of the 60S ribosomal subunit.
    REACT_75768. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_75822. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_79. L13a-mediated translational silencing of Ceruloplasmin expression.
    REACT_9491. Viral mRNA Translation.

    Miscellaneous databases

    ChiTaRSi RPL5. human.
    GeneWikii Ribosomal_protein_L5.
    GenomeRNAii 6125.
    NextBioi 23791.
    PROi P46777.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi P46777.
    Bgeei P46777.
    CleanExi HS_RPL5.
    Genevestigatori P46777.

    Family and domain databases

    HAMAPi MF_01337_A. Ribosomal_L18_A.
    InterProi IPR005485. Rbsml_L5_euk/L18_arc.
    IPR025607. Rbsml_L5e/L18P_C.
    IPR005484. Ribosomal_L18/L5.
    [Graphical view ]
    PANTHERi PTHR23410. PTHR23410. 1 hit.
    Pfami PF14204. Ribosomal_L18_c. 1 hit.
    PF00861. Ribosomal_L18p. 1 hit.
    [Graphical view ]
    PRINTSi PR00058. RIBOSOMALL5.
    ProtoNeti Search...

    Publicationsi

    1. "Cloning, sequencing and expression of the L5, L21, L27a, L28, S5, S9, S10 and S29 human ribosomal protein mRNAs."
      Frigerio J.-M., Dagorn J.-C., Iovanna J.L.
      Biochim. Biophys. Acta 1262:64-68(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Tissue: Colon.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Aorta.
    3. Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Coronary arterial endothelium.
    4. "The DNA sequence and biological annotation of human chromosome 1."
      Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
      , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
      Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT CYS-210.
      Tissue: Lung.
    6. "Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing."
      Odintsova T.I., Muller E.C., Ivanov A.V., Egorov T.A., Bienert R., Vladimirov S.N., Kostka S., Otto A., Wittmann-Liebold B., Karpova G.G.
      J. Protein Chem. 22:249-258(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-12, IDENTIFICATION BY MASS SPECTROMETRY.
    7. Bienvenut W.V.
      Submitted (AUG-2005) to UniProtKB
      Cited for: PROTEIN SEQUENCE OF 69-85; 159-188 AND 222-228, SUBCELLULAR LOCATION, IDENTIFICATION BY MASS SPECTROMETRY.
      Tissue: Cervix carcinoma.
    8. "Interaction of the beta subunit of casein kinase II with the ribosomal protein L5."
      Kim J.-M., Cha J.-Y., Marshak D.R., Bae Y.-S.
      Biochem. Biophys. Res. Commun. 226:180-186(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 153-297.
    9. "U21, a novel small nucleolar RNA with a 13 nt. complementarity to 28S rRNA, is encoded in an intron of ribosomal protein L5 gene in chicken and mammals."
      Qu L.H., Nicoloso M., Michot B., Azum M.C., Caizergues-Ferrer M., Renalier M.H., Bachellerie J.-P.
      Nucleic Acids Res. 22:4073-4081(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 162-176.
    10. Cited for: FUNCTION, VARIANT DBA6 SER-140.
    11. "Lysine acetylation targets protein complexes and co-regulates major cellular functions."
      Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M.
      Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-5 AND LYS-48, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    12. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    13. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
      Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
      Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-272, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    14. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT GLY-2, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS], CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS].
    15. Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.0 ANGSTROMS) OF 80S RIBOSOME.
    16. "Identification of mutations in the ribosomal protein L5 (RPL5) and ribosomal protein L11 (RPL11) genes in Czech patients with Diamond-Blackfan anemia."
      Cmejla R., Cmejlova J., Handrkova H., Petrak J., Petrtylova K., Mihal V., Stary J., Cerna Z., Jabali Y., Pospisilova D.
      Hum. Mutat. 30:321-327(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: VARIANT DBA6 VAL-285.

    Entry informationi

    Entry nameiRL5_HUMAN
    AccessioniPrimary (citable) accession number: P46777
    Secondary accession number(s): Q32LZ3, Q53HH6, Q9H3F4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 141 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Human chromosome 1
      Human chromosome 1: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations
    4. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
    5. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    6. Ribosomal proteins
      Ribosomal proteins families and list of entries
    7. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3