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P46620

- NU5C_MAIZE

UniProt

P46620 - NU5C_MAIZE

Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene

ndhF

Organism
Zea mays (Maize)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (01 Nov 1995)
      Previous versions | rss
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    Functioni

    NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.By similarity

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro
    2. transport Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Transport

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
    Alternative name(s):
    NAD(P)H dehydrogenase subunit 5
    NADH-plastoquinone oxidoreductase subunit 5
    Gene namesi
    Name:ndhF
    Synonyms:ndh5
    Encoded oniPlastid; Chloroplast
    OrganismiZea mays (Maize)
    Taxonomic identifieri4577 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeZea
    ProteomesiUP000007305: Chloroplast

    Organism-specific databases

    GrameneiP46620.
    MaizeGDBi107782.

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 738738NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000118191Add
    BLAST

    Keywords - PTMi

    Quinone

    Interactioni

    Subunit structurei

    NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.By similarity

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei9 – 2921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei39 – 5921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei89 – 10921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei125 – 14521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei147 – 16721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei185 – 20521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei219 – 23921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei258 – 27821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei280 – 30021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei327 – 34721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei354 – 37421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei396 – 41621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei425 – 44521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei542 – 56221HelicalSequence AnalysisAdd
    BLAST
    Transmembranei610 – 63021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei691 – 71121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei717 – 73721HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 5 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    HOGENOMiHOG000100569.
    KOiK05577.
    OMAiFMAVLNH.

    Family and domain databases

    InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view]
    PRINTSiPR01435. NPOXDRDTASE5.
    TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P46620-1 [UniParc]FASTAAdd to Basket

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    MEHTYQYAWV IPLLPLPVIM SMGFGLFLIP TATKNLRRIW AFPSILLLSI    50
    AMVFSLHLSI QQINGSSIYQ YLWSWTINND FSLEFGYLVD PLTSIMLILI 100
    TTVGILVLIY SDDYMSHDEG YLRFFVYISF FNTSMLGLVT SSNLIQIYFF 150
    WELVGMCSYL LIGFWFTRPI AASACQKAFV TNRVGDFGLL LGILGFFWIT 200
    GSLEFRDLFK IANNWIPNNG INSLLTTLCA FLLFLGAVAK SAQFPLHVWL 250
    PDAMEGPTPI SALIHAATMV AAGIFLLARL LPLFISLPWI MSFISLIGTI 300
    TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA 350
    YSKALLFLGS GSVIHSMEPL VGYSPDKSQN MVLMGGLRKY VPITRTTFLC 400
    GTLSLCGIPP LACFWSKDEI LSNSWLYSPF FGIIASFTAG LTAFYMFRIY 450
    LLTFDGYLRV HFQNYSSTKE GSLYSISLWG KSISKGVNRD FVLSTMKSGV 500
    SFFSQNIPKI PANTRNKIGS FSTPFGAKNT FVYPHETGNT MLFPLLILLL 550
    FTLFIGSIGI HFDNGVKDNR ILELTILSKW LTPSINLFQE NSNSSINSYE 600
    FLTNAISSVS LAIFGLFIAY IFYGSAYSFF QNLNFQNSLV KKNPKKSFLD 650
    EVKKKIYSWS YNRGYIDFFY TRVFILGIRK LAELTHFFDK GVIDGITNGV 700
    GLAGFCIGEE IKYVGGGRIS SYLFFFLCYV SLFLFFIP 738
    Length:738
    Mass (Da):82,976
    Last modified:November 1, 1995 - v1
    Checksum:iF4E3EBD0DD3C91FA
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti268 – 2681Missing in AAA64703. 1 PublicationCurated
    Sequence conflicti289 – 2891W → L in AAA64703. 1 PublicationCurated
    Sequence conflicti570 – 5701R → G in AAA64703. 1 PublicationCurated
    Sequence conflicti680 – 6801K → R in AAA64703. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X86563 Genomic DNA. Translation: CAA60346.1.
    U21985 Genomic DNA. Translation: AAA64703.1.
    PIRiS58612.
    RefSeqiNP_043084.1. NC_001666.2.

    Genome annotation databases

    GeneIDi845185.
    KEGGizma:845185.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X86563 Genomic DNA. Translation: CAA60346.1 .
    U21985 Genomic DNA. Translation: AAA64703.1 .
    PIRi S58612.
    RefSeqi NP_043084.1. NC_001666.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 845185.
    KEGGi zma:845185.

    Organism-specific databases

    Gramenei P46620.
    MaizeGDBi 107782.

    Phylogenomic databases

    HOGENOMi HOG000100569.
    KOi K05577.
    OMAi FMAVLNH.

    Family and domain databases

    InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view ]
    PRINTSi PR01435. NPOXDRDTASE5.
    TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing."
      Maier R.M., Neckermann K., Igloi G.L., Koessel H.
      J. Mol. Biol. 251:614-628(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. B73.
    2. Clark L.G., Zhang W., Wendel J.F.
      Submitted (FEB-1995) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 9-709.
      Tissue: Leaf.

    Entry informationi

    Entry nameiNU5C_MAIZE
    AccessioniPrimary (citable) accession number: P46620
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: November 1, 1995
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3