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P46620

- NU5C_MAIZE

UniProt

P46620 - NU5C_MAIZE

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Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene
ndhF, ndh5
Organism
Zea mays (Maize)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
  2. transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Transport

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene namesi
Name:ndhF
Synonyms:ndh5
Encoded oniPlastid; Chloroplast
OrganismiZea mays (Maize)
Taxonomic identifieri4577 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeZea
ProteomesiUP000007305: Chloroplast

Organism-specific databases

GrameneiP46620.
MaizeGDBi107782.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei9 – 2921Helical; Reviewed predictionAdd
BLAST
Transmembranei39 – 5921Helical; Reviewed predictionAdd
BLAST
Transmembranei89 – 10921Helical; Reviewed predictionAdd
BLAST
Transmembranei125 – 14521Helical; Reviewed predictionAdd
BLAST
Transmembranei147 – 16721Helical; Reviewed predictionAdd
BLAST
Transmembranei185 – 20521Helical; Reviewed predictionAdd
BLAST
Transmembranei219 – 23921Helical; Reviewed predictionAdd
BLAST
Transmembranei258 – 27821Helical; Reviewed predictionAdd
BLAST
Transmembranei280 – 30021Helical; Reviewed predictionAdd
BLAST
Transmembranei327 – 34721Helical; Reviewed predictionAdd
BLAST
Transmembranei354 – 37421Helical; Reviewed predictionAdd
BLAST
Transmembranei396 – 41621Helical; Reviewed predictionAdd
BLAST
Transmembranei425 – 44521Helical; Reviewed predictionAdd
BLAST
Transmembranei542 – 56221Helical; Reviewed predictionAdd
BLAST
Transmembranei610 – 63021Helical; Reviewed predictionAdd
BLAST
Transmembranei691 – 71121Helical; Reviewed predictionAdd
BLAST
Transmembranei717 – 73721Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 738738NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000118191Add
BLAST

Keywords - PTMi

Quinone

Interactioni

Subunit structurei

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000100569.
KOiK05577.
OMAiFMAVLNH.

Family and domain databases

InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

Sequencei

Sequence statusi: Complete.

P46620-1 [UniParc]FASTAAdd to Basket

« Hide

MEHTYQYAWV IPLLPLPVIM SMGFGLFLIP TATKNLRRIW AFPSILLLSI    50
AMVFSLHLSI QQINGSSIYQ YLWSWTINND FSLEFGYLVD PLTSIMLILI 100
TTVGILVLIY SDDYMSHDEG YLRFFVYISF FNTSMLGLVT SSNLIQIYFF 150
WELVGMCSYL LIGFWFTRPI AASACQKAFV TNRVGDFGLL LGILGFFWIT 200
GSLEFRDLFK IANNWIPNNG INSLLTTLCA FLLFLGAVAK SAQFPLHVWL 250
PDAMEGPTPI SALIHAATMV AAGIFLLARL LPLFISLPWI MSFISLIGTI 300
TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA 350
YSKALLFLGS GSVIHSMEPL VGYSPDKSQN MVLMGGLRKY VPITRTTFLC 400
GTLSLCGIPP LACFWSKDEI LSNSWLYSPF FGIIASFTAG LTAFYMFRIY 450
LLTFDGYLRV HFQNYSSTKE GSLYSISLWG KSISKGVNRD FVLSTMKSGV 500
SFFSQNIPKI PANTRNKIGS FSTPFGAKNT FVYPHETGNT MLFPLLILLL 550
FTLFIGSIGI HFDNGVKDNR ILELTILSKW LTPSINLFQE NSNSSINSYE 600
FLTNAISSVS LAIFGLFIAY IFYGSAYSFF QNLNFQNSLV KKNPKKSFLD 650
EVKKKIYSWS YNRGYIDFFY TRVFILGIRK LAELTHFFDK GVIDGITNGV 700
GLAGFCIGEE IKYVGGGRIS SYLFFFLCYV SLFLFFIP 738
Length:738
Mass (Da):82,976
Last modified:November 1, 1995 - v1
Checksum:iF4E3EBD0DD3C91FA
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti268 – 2681Missing in AAA64703. 1 Publication
Sequence conflicti289 – 2891W → L in AAA64703. 1 Publication
Sequence conflicti570 – 5701R → G in AAA64703. 1 Publication
Sequence conflicti680 – 6801K → R in AAA64703. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X86563 Genomic DNA. Translation: CAA60346.1.
U21985 Genomic DNA. Translation: AAA64703.1.
PIRiS58612.
RefSeqiNP_043084.1. NC_001666.2.

Genome annotation databases

GeneIDi845185.
KEGGizma:845185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X86563 Genomic DNA. Translation: CAA60346.1 .
U21985 Genomic DNA. Translation: AAA64703.1 .
PIRi S58612.
RefSeqi NP_043084.1. NC_001666.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 845185.
KEGGi zma:845185.

Organism-specific databases

Gramenei P46620.
MaizeGDBi 107782.

Phylogenomic databases

HOGENOMi HOG000100569.
KOi K05577.
OMAi FMAVLNH.

Family and domain databases

InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view ]
PRINTSi PR01435. NPOXDRDTASE5.
TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing."
    Maier R.M., Neckermann K., Igloi G.L., Koessel H.
    J. Mol. Biol. 251:614-628(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. B73.
  2. Clark L.G., Zhang W., Wendel J.F.
    Submitted (FEB-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 9-709.
    Tissue: Leaf.

Entry informationi

Entry nameiNU5C_MAIZE
AccessioniPrimary (citable) accession number: P46620
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: July 9, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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