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Protein

Uncharacterized protein YhdP

Gene

yhdP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7690-MONOMER.
ECOL316407:JW5542-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YhdP
Gene namesi
Name:yhdP
Synonyms:yhdQ, yhdR
Ordered Locus Names:b4472, JW5542
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12827. yhdP.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 12661237Uncharacterized protein YhdPPRO_0000013923Add
BLAST

Proteomic databases

PaxDbiP46474.

Interactioni

Protein-protein interaction databases

BioGridi4261747. 6 interactions.
DIPiDIP-12299N.
IntActiP46474. 1 interaction.
MINTiMINT-1261114.
STRINGi511145.b4472.

Structurei

3D structure databases

ProteinModelPortaliP46474.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105QD6. Bacteria.
COG3164. LUCA.
HOGENOMiHOG000125283.
InParanoidiP46474.
OMAiSLPQSDW.

Family and domain databases

InterProiIPR032712. AsmA_C.
IPR011836. CHP02099.
IPR025263. DUF3971.
[Graphical view]
PfamiPF13502. AsmA_2. 1 hit.
PF13116. DUF3971. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02099. TIGR02099. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P46474-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRLPGILLL TGAALVVIAA LLVSGLRIAL PHLDAWRPEI LNKIESATGM
60 70 80 90 100
PVEASQLSAS WQNFGPTLEA HDIRAELKDG GEFSVKRVTL ALDVWQSLLH
110 120 130 140 150
MRWQFRDLTF WQLRFRTNTP ITSGGSDDSL EASHISDLFL RQFDHFDLRD
160 170 180 190 200
SEVSFLTPSG QRAELAIPQL TWLNDPRRHR AEGLVSLSSL TGQHGVMQVR
210 220 230 240 250
MDLRDDEGLL SNGRVWLQAD DIDLKPWLGK WMQDNIALET AQFSLEGWMT
260 270 280 290 300
IDKGDVTGGD VWLKQGGASW LGEKQTHTLS VDNLTAHITR ENPGWQFSIP
310 320 330 340 350
DTRITMDGKP WPSGALTLAW IPEQDVGGKD NKRSDELRIR ASNLELAGLE
360 370 380 390 400
GIRPLAAKLS PALGDVWRST QPSGKINTLA LDIPLQAADK TRFQASWSDL
410 420 430 440 450
AWKQWKLLPG AEHFSGTLSG SVENGLLTAS MKQAKMPYET VFRAPLEIAD
460 470 480 490 500
GQATISWLNN NKGFQLDGRN IDVKAKAVHA RGGFRYLQPA NDEPWLGILA
510 520 530 540 550
GISTDDGSQA WRYFPENLMG KDLVDYLSGA IQGGEADNAT LVYGGNPQLF
560 570 580 590 600
PYKHNEGQFE VLVPLRNAKF AFQPDWPALT NLDIELDFIN DGLWMKTDGV
610 620 630 640 650
NLGGVRASNL TAVIPDYSKE KLLIDADIKG PGKAVGPYFD ETPLKDSLGA
660 670 680 690 700
TLQELQLDGD VNARLHLDIP LNGELVTAKG EVTLRNNSLF IKPLDSTLKN
710 720 730 740 750
LSGKFSFINS DLQSEPLTAS WFNQPLNVDF STKEGAKAYQ VAVNLNGNWQ
760 770 780 790 800
PAKTGVLPEA VNEALSGSVA WDGKVGIDLP YHAGATYNIE LNGDLKNVSS
810 820 830 840 850
HLPSPLAKPA GEPLAVNVKV DGNLNSFELT GQAGADNHFN SRWLLGQKLT
860 870 880 890 900
LDRAIWAADS KTLPPLPEQS GVELNMPPMN GAEWLALFQK GAAESVGGAA
910 920 930 940 950
SFPQHITLRT PMLSLGNQQW NNLSIVSQPT ANGTLVEAQG REINATLAMR
960 970 980 990 1000
NNAPWLANIK YLYYNPSVAK TRGDSTPSSP FPTTERINFR GWPDAQIRCT
1010 1020 1030 1040 1050
ECWFWGQKFG RIDSDITISG DTLTLTNGLI DTGFSRLTAD GEWVNNPGNE
1060 1070 1080 1090 1100
RTSLKGKLRG QKIDAAAEFF GVTTPIRQSS FNVDYDLHWR KAPWQPDEAT
1110 1120 1130 1140 1150
LNGIIHTQLG KGEITEINTG HAGQLLRLLS VDALMRKLRF DFRDTFGEGF
1160 1170 1180 1190 1200
YFDSIRSTAW IKDGVMHTDD TLVDGLEADI AMKGSVNLVR RDLNMEAVVA
1210 1220 1230 1240 1250
PEISATVGVA AAFAVNPIVG AAVFAASKVL GPLWSKVSIL RYHISGPLDD
1260
PQINEVLRQP RKEKAQ
Length:1,266
Mass (Da):139,053
Last modified:November 23, 2004 - v4
Checksum:i414AB7D36E5A90DE
GO

Sequence cautioni

The sequence AAA58047 differs from that shown. Reason: Frameshift at positions 265 and 736. Produces three separate ORFs (yhdP, yhdQ and yhdR).Curated
The sequence AAA58048 differs from that shown. Reason: Frameshift at positions 265 and 736. Produces three separate ORFs (yhdP, yhdQ and yhdR).Curated
The sequence AAA58049 differs from that shown. Reason: Frameshift at positions 265 and 736. Produces three separate ORFs (yhdP, yhdQ and yhdR).Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti351 – 3511G → A in AAA58048 (PubMed:9278503).Curated
Sequence conflicti354 – 3541P → R in AAA58048 (PubMed:9278503).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58047.1. Frameshift.
U18997 Genomic DNA. Translation: AAA58048.1. Frameshift.
U18997 Genomic DNA. Translation: AAA58049.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48173.1.
AP009048 Genomic DNA. Translation: BAE77288.1.
X57166 Genomic DNA. No translation available.
PIRiG65116.
H65116.
RefSeqiWP_001253618.1. NZ_LN832404.1.
YP_026208.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48173; AAT48173; b4472.
BAE77288; BAE77288; BAE77288.
GeneIDi2847740.
KEGGiecj:JW5542.
eco:b4472.
PATRICi32121918. VBIEscCol129921_3343.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58047.1. Frameshift.
U18997 Genomic DNA. Translation: AAA58048.1. Frameshift.
U18997 Genomic DNA. Translation: AAA58049.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48173.1.
AP009048 Genomic DNA. Translation: BAE77288.1.
X57166 Genomic DNA. No translation available.
PIRiG65116.
H65116.
RefSeqiWP_001253618.1. NZ_LN832404.1.
YP_026208.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP46474.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261747. 6 interactions.
DIPiDIP-12299N.
IntActiP46474. 1 interaction.
MINTiMINT-1261114.
STRINGi511145.b4472.

Proteomic databases

PaxDbiP46474.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48173; AAT48173; b4472.
BAE77288; BAE77288; BAE77288.
GeneIDi2847740.
KEGGiecj:JW5542.
eco:b4472.
PATRICi32121918. VBIEscCol129921_3343.

Organism-specific databases

EchoBASEiEB2678.
EcoGeneiEG12827. yhdP.

Phylogenomic databases

eggNOGiENOG4105QD6. Bacteria.
COG3164. LUCA.
HOGENOMiHOG000125283.
InParanoidiP46474.
OMAiSLPQSDW.

Enzyme and pathway databases

BioCyciEcoCyc:G7690-MONOMER.
ECOL316407:JW5542-MONOMER.

Miscellaneous databases

PROiP46474.

Family and domain databases

InterProiIPR032712. AsmA_C.
IPR011836. CHP02099.
IPR025263. DUF3971.
[Graphical view]
PfamiPF13502. AsmA_2. 1 hit.
PF13116. DUF3971. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02099. TIGR02099. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYHDP_ECOLI
AccessioniPrimary (citable) accession number: P46474
Secondary accession number(s): P46475
, P46476, P76676, Q2M8W8, Q6BF41
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 23, 2004
Last modified: September 7, 2016
This is version 108 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.