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Protein

Uncharacterized protein YxbC

Gene

yxbC

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Fe2+By similarity1 PublicationNote: Binds 1 Fe2+ ion per subunit.By similarity1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi145Iron; via tele nitrogen1 Publication1
Metal bindingi147Iron1 Publication1
Metal bindingi224Iron; via tele nitrogen1 Publication1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Iron, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU39880-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YxbC
Gene namesi
Name:yxbC
Synonyms:yxaQ
Ordered Locus Names:BSU39880
ORF Names:VE7D
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000500061 – 330Uncharacterized protein YxbCAdd BLAST330

Proteomic databases

PaxDbiP46327.
PRIDEiP46327.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021506.

Structurei

Secondary structure

1330
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi10 – 13Combined sources4
Helixi18 – 24Combined sources7
Turni25 – 28Combined sources4
Beta strandi31 – 33Combined sources3
Helixi37 – 42Combined sources6
Helixi47 – 49Combined sources3
Helixi52 – 58Combined sources7
Beta strandi63 – 65Combined sources3
Helixi68 – 71Combined sources4
Turni72 – 75Combined sources4
Beta strandi81 – 83Combined sources3
Helixi85 – 93Combined sources9
Beta strandi98 – 100Combined sources3
Helixi103 – 105Combined sources3
Helixi109 – 120Combined sources12
Beta strandi129 – 136Combined sources8
Beta strandi144 – 146Combined sources3
Beta strandi148 – 158Combined sources11
Beta strandi160 – 165Combined sources6
Helixi187 – 192Combined sources6
Beta strandi204 – 210Combined sources7
Beta strandi215 – 218Combined sources4
Beta strandi223 – 227Combined sources5
Beta strandi232 – 239Combined sources8
Helixi244 – 256Combined sources13
Helixi260 – 263Combined sources4
Helixi274 – 296Combined sources23
Helixi300 – 304Combined sources5
Turni305 – 308Combined sources4
Helixi313 – 325Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VRBX-ray2.60A/B/C/D1-330[»]
ProteinModelPortaliP46327.
SMRiP46327.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP46327.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini96 – 256JmjCPROSITE-ProRule annotationAdd BLAST161

Sequence similaritiesi

Belongs to the ROX family.Curated
Contains 1 JmjC domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105N1N. Bacteria.
COG2850. LUCA.
HOGENOMiHOG000155731.
InParanoidiP46327.
OMAiVSTHEAM.
PhylomeDBiP46327.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
PfamiPF08007. Cupin_4. 1 hit.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P46327-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAVTESVLE SIISPVTMSE FLEEYWPVKP LVARGEVERF TSIPGFEKVR
60 70 80 90 100
TLENVLAIYN NPVMVVGDAV IEESEGITDR FLVSPAEALE WYEKGAALEF
110 120 130 140 150
DFTDLFIPQV RRWIEKLKAE LRLPAGTSSK AIVYAAKNGG GFKAHFDAYT
160 170 180 190 200
NLIFQIQGEK TWKLAKNENV SNPMQHYDLS EAPYYPDDLQ SYWKGDPPKE
210 220 230 240 250
DLPDAEIVNL TPGTMLYLPR GLWHSTKSDQ ATLALNITFG QPAWLDLMLA
260 270 280 290 300
ALRKKLISDN RFRELAVNHQ SLHESSKSEL NGYLESLIQT LSENAETLTP
310 320 330
EQIFQSQDSD FDPYQSTQLV FRQLLTSYKF
Length:330
Mass (Da):37,458
Last modified:November 1, 1995 - v1
Checksum:iE1B399E6EA67C006
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005554 Genomic DNA. Translation: BAA21597.1.
AL009126 Genomic DNA. Translation: CAB16024.1.
PIRiG70072.
RefSeqiNP_391867.1. NC_000964.3.
WP_003243554.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB16024; CAB16024; BSU39880.
GeneIDi937640.
KEGGibsu:BSU39880.
PATRICi18980044. VBIBacSub10457_4184.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005554 Genomic DNA. Translation: BAA21597.1.
AL009126 Genomic DNA. Translation: CAB16024.1.
PIRiG70072.
RefSeqiNP_391867.1. NC_000964.3.
WP_003243554.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VRBX-ray2.60A/B/C/D1-330[»]
ProteinModelPortaliP46327.
SMRiP46327.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021506.

Proteomic databases

PaxDbiP46327.
PRIDEiP46327.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB16024; CAB16024; BSU39880.
GeneIDi937640.
KEGGibsu:BSU39880.
PATRICi18980044. VBIBacSub10457_4184.

Phylogenomic databases

eggNOGiENOG4105N1N. Bacteria.
COG2850. LUCA.
HOGENOMiHOG000155731.
InParanoidiP46327.
OMAiVSTHEAM.
PhylomeDBiP46327.

Enzyme and pathway databases

BioCyciBSUB:BSU39880-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP46327.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
PfamiPF08007. Cupin_4. 1 hit.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYXBC_BACSU
AccessioniPrimary (citable) accession number: P46327
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: November 2, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.