Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YxbC

Gene

yxbC

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Fe2+By similarity1 PublicationNote: Binds 1 Fe2+ ion per subunit.By similarity1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi145 – 1451Iron; via tele nitrogen1 Publication
Metal bindingi147 – 1471Iron1 Publication
Metal bindingi224 – 2241Iron; via tele nitrogen1 Publication

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Iron, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU39880-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YxbC
Gene namesi
Name:yxbC
Synonyms:yxaQ
Ordered Locus Names:BSU39880
ORF Names:VE7D
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 330330Uncharacterized protein YxbCPRO_0000050006Add
BLAST

Proteomic databases

PaxDbiP46327.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021506.

Structurei

Secondary structure

1
330
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi10 – 134Combined sources
Helixi18 – 247Combined sources
Turni25 – 284Combined sources
Beta strandi31 – 333Combined sources
Helixi37 – 426Combined sources
Helixi47 – 493Combined sources
Helixi52 – 587Combined sources
Beta strandi63 – 653Combined sources
Helixi68 – 714Combined sources
Turni72 – 754Combined sources
Beta strandi81 – 833Combined sources
Helixi85 – 939Combined sources
Beta strandi98 – 1003Combined sources
Helixi103 – 1053Combined sources
Helixi109 – 12012Combined sources
Beta strandi129 – 1368Combined sources
Beta strandi144 – 1463Combined sources
Beta strandi148 – 15811Combined sources
Beta strandi160 – 1656Combined sources
Helixi187 – 1926Combined sources
Beta strandi204 – 2107Combined sources
Beta strandi215 – 2184Combined sources
Beta strandi223 – 2275Combined sources
Beta strandi232 – 2398Combined sources
Helixi244 – 25613Combined sources
Helixi260 – 2634Combined sources
Helixi274 – 29623Combined sources
Helixi300 – 3045Combined sources
Turni305 – 3084Combined sources
Helixi313 – 32513Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VRBX-ray2.60A/B/C/D1-330[»]
ProteinModelPortaliP46327.
SMRiP46327. Positions 7-326.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP46327.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini96 – 256161JmjCPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ROX family.Curated
Contains 1 JmjC domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105N1N. Bacteria.
COG2850. LUCA.
HOGENOMiHOG000155731.
InParanoidiP46327.
OMAiSTHEAMS.
OrthoDBiEOG676Z13.
PhylomeDBiP46327.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
PfamiPF08007. Cupin_4. 1 hit.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P46327-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAVTESVLE SIISPVTMSE FLEEYWPVKP LVARGEVERF TSIPGFEKVR
60 70 80 90 100
TLENVLAIYN NPVMVVGDAV IEESEGITDR FLVSPAEALE WYEKGAALEF
110 120 130 140 150
DFTDLFIPQV RRWIEKLKAE LRLPAGTSSK AIVYAAKNGG GFKAHFDAYT
160 170 180 190 200
NLIFQIQGEK TWKLAKNENV SNPMQHYDLS EAPYYPDDLQ SYWKGDPPKE
210 220 230 240 250
DLPDAEIVNL TPGTMLYLPR GLWHSTKSDQ ATLALNITFG QPAWLDLMLA
260 270 280 290 300
ALRKKLISDN RFRELAVNHQ SLHESSKSEL NGYLESLIQT LSENAETLTP
310 320 330
EQIFQSQDSD FDPYQSTQLV FRQLLTSYKF
Length:330
Mass (Da):37,458
Last modified:November 1, 1995 - v1
Checksum:iE1B399E6EA67C006
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005554 Genomic DNA. Translation: BAA21597.1.
AL009126 Genomic DNA. Translation: CAB16024.1.
PIRiG70072.
RefSeqiNP_391867.1. NC_000964.3.
WP_003243554.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB16024; CAB16024; BSU39880.
GeneIDi937640.
KEGGibsu:BSU39880.
PATRICi18980044. VBIBacSub10457_4184.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005554 Genomic DNA. Translation: BAA21597.1.
AL009126 Genomic DNA. Translation: CAB16024.1.
PIRiG70072.
RefSeqiNP_391867.1. NC_000964.3.
WP_003243554.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VRBX-ray2.60A/B/C/D1-330[»]
ProteinModelPortaliP46327.
SMRiP46327. Positions 7-326.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021506.

Proteomic databases

PaxDbiP46327.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB16024; CAB16024; BSU39880.
GeneIDi937640.
KEGGibsu:BSU39880.
PATRICi18980044. VBIBacSub10457_4184.

Phylogenomic databases

eggNOGiENOG4105N1N. Bacteria.
COG2850. LUCA.
HOGENOMiHOG000155731.
InParanoidiP46327.
OMAiSTHEAMS.
OrthoDBiEOG676Z13.
PhylomeDBiP46327.

Enzyme and pathway databases

BioCyciBSUB:BSU39880-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP46327.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
PfamiPF08007. Cupin_4. 1 hit.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and sequencing of a 36-kb region of the Bacillus subtilis genome between the gnt and iol operons."
    Yoshida K., Seki S., Fujimura M., Miwa Y., Fujita Y.
    DNA Res. 2:61-69(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / BGSC1A1.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "Crystal structure of putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution."
    Joint center for structural genomics (JCSG)
    Submitted (MAR-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) IN COMPLEX WITH IRON IONS.

Entry informationi

Entry nameiYXBC_BACSU
AccessioniPrimary (citable) accession number: P46327
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: February 17, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.