Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L20

Gene

rplT

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:BUsg_120
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesErwiniaceaeBuchnera
Proteomesi
  • UP000000416 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001771332 – 11850S ribosomal protein L20Add BLAST117

Interactioni

Protein-protein interaction databases

STRINGi198804.BUsg120.

Structurei

3D structure databases

ProteinModelPortaliP46246.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.Curated

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P46246-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARVKRGVTA HARHKKVLKQ AKGYYGARSR IYRVACQAVI KAGQYAYRDR
60 70 80 90 100
RQRKRQFRQL WITRINAAVR QSQMSYSSFM YGLKKASINI DRKILSDIAI
110
FDGFSFNILI KKAKEALL
Length:118
Mass (Da):13,758
Last modified:January 23, 2007 - v3
Checksum:i64C38C0FA9AF0D24
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM67688.1.
U11066 Genomic DNA. Translation: AAC43608.1.
PIRiI40074.
RefSeqiWP_011053655.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM67688; AAM67688; BUsg_120.
KEGGibas:BUsg_120.
PATRICi21247021. VBIBucAph100086_0124.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM67688.1.
U11066 Genomic DNA. Translation: AAC43608.1.
PIRiI40074.
RefSeqiWP_011053655.1. NC_004061.1.

3D structure databases

ProteinModelPortaliP46246.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198804.BUsg120.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM67688; AAM67688; BUsg_120.
KEGGibas:BUsg_120.
PATRICi21247021. VBIBucAph100086_0124.

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL20_BUCAP
AccessioniPrimary (citable) accession number: P46246
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 110 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.