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Protein

Uncharacterized protein CcmO

Gene

ccmO

Organism
Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.

Enzyme and pathway databases

BioCyciSYNEL:SYNPCC7942_1425-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein CcmO
Gene namesi
Name:ccmO
Ordered Locus Names:Synpcc7942_1425
OrganismiSynechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
Taxonomic identifieri1140 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000002717 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence AnalysisAdd
BLAST
Chaini30 – 276247Uncharacterized protein CcmOPRO_0000004789Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi1140.Synpcc7942_1425.

Structurei

3D structure databases

ProteinModelPortaliP46205.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domaini

Contains 2 homologous domains.

Sequence similaritiesi

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000035855.
KOiK08700.
OrthoDBiEOG6ZH2H4.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 2 hits.
[Graphical view]
SMARTiSM00877. BMC. 2 hits.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P46205-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSASLPAYSQ PRNAGALGVI CTRSFPAVVG TADMMLKSAD VTLIGYEKTG
60 70 80 90 100
SGFCTAIIRG GYADIKLALE AGVATARQFE QYVSSTILPR PQGNLEAVLP
110 120 130 140 150
ISRRLSQEAM ATRSHQNVGA IGLIETNGFP ALVGAADAML KSANVKLICY
160 170 180 190 200
EKTGSGLCTA IVQGTVSNVT VAVEAGMYAA ERIGQLNAIM VIPRPLDDLM
210 220 230 240 250
DSLPEPQSDS EAAQPLQLPL RVREKQPLLE LPELERQPIA IEAPRLLAEE
260 270
RQSALELAQE TPLAEPLELP NPRDDQ
Length:276
Mass (Da):29,431
Last modified:April 18, 2006 - v2
Checksum:iF25514DB099D931F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti35 – 351Missing in AAA27327 (PubMed:2509426).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30808 Genomic DNA. Translation: AAA27327.1.
CP000100 Genomic DNA. Translation: ABB57455.1.
RefSeqiWP_011242445.1. NC_007604.1.
YP_400442.1. NC_007604.1.

Genome annotation databases

EnsemblBacteriaiABB57455; ABB57455; Synpcc7942_1425.
KEGGisyf:Synpcc7942_1425.
PATRICi23788199. VBISynElo51371_1626.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30808 Genomic DNA. Translation: AAA27327.1.
CP000100 Genomic DNA. Translation: ABB57455.1.
RefSeqiWP_011242445.1. NC_007604.1.
YP_400442.1. NC_007604.1.

3D structure databases

ProteinModelPortaliP46205.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1140.Synpcc7942_1425.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB57455; ABB57455; Synpcc7942_1425.
KEGGisyf:Synpcc7942_1425.
PATRICi23788199. VBISynElo51371_1626.

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000035855.
KOiK08700.
OrthoDBiEOG6ZH2H4.

Enzyme and pathway databases

BioCyciSYNEL:SYNPCC7942_1425-MONOMER.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 2 hits.
[Graphical view]
SMARTiSM00877. BMC. 2 hits.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The 5'-flanking region of the gene encoding the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase is crucial for growth of the cyanobacterium Synechococcus sp. strain PCC 7942 at the level of CO2 in air."
    Friedberg D., Kaplan A., Ariel R., Kessel M., Seijffers J.
    J. Bacteriol. 171:6069-6076(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete sequence of chromosome 1 of Synechococcus elongatus PCC 7942."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Schmutz J., Larimer F., Land M., Kyrpides N., Lykidis A., Richardson P.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 7942.

Entry informationi

Entry nameiCCMO_SYNE7
AccessioniPrimary (citable) accession number: P46205
Secondary accession number(s): Q31NB4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: April 18, 2006
Last modified: May 27, 2015
This is version 66 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.