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Protein

Uncharacterized protein YedJ

Gene

yedJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12710-MONOMER.
ECOL316407:JW1945-MONOMER.
RETL1328306-WGS:GSTH-1406-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YedJ
Gene namesi
Name:yedJ
Ordered Locus Names:b1962, JW1945
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12710. yedJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 231231Uncharacterized protein YedJPRO_0000169093Add
BLAST

Proteomic databases

PaxDbiP46144.

Interactioni

Protein-protein interaction databases

BioGridi4259162. 13 interactions.
IntActiP46144. 13 interactions.
STRINGi511145.b1962.

Structurei

Secondary structure

1
231
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni5 – 73Combined sources
Helixi8 – 103Combined sources
Turni11 – 155Combined sources
Helixi29 – 4012Combined sources
Turni41 – 433Combined sources
Helixi50 – 578Combined sources
Turni58 – 614Combined sources
Helixi75 – 8511Combined sources
Turni86 – 905Combined sources
Turni94 – 974Combined sources
Turni100 – 1023Combined sources
Helixi103 – 1053Combined sources
Helixi118 – 1269Combined sources
Helixi128 – 1314Combined sources
Helixi133 – 14614Combined sources
Helixi153 – 1597Combined sources
Helixi170 – 1745Combined sources
Turni175 – 1773Combined sources
Helixi178 – 1803Combined sources
Turni181 – 1844Combined sources
Helixi188 – 21225Combined sources
Helixi224 – 2274Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3GW7X-ray3.30A/B1-231[»]
ProteinModelPortaliP46144.
SMRiP46144. Positions 4-231.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP46144.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 132107HDAdd
BLAST

Sequence similaritiesi

Contains 1 HD domain.Curated

Phylogenomic databases

eggNOGiENOG4105EST. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000034253.
InParanoidiP46144.
KOiK06950.
OMAiCVAVEKN.
PhylomeDBiP46144.

Family and domain databases

Gene3Di1.10.3210.10. 2 hits.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
[Graphical view]
PfamiPF01966. HD. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P46144-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLQHWQAQF ENWLKNHHQH QDAAHDVCHF RRVWATAQKL AADDDVDMLV
60 70 80 90 100
ILTACYFHDI VSLAKNHPQR QRSSILAAEE TRRLLREEFE QFPAEKIEAV
110 120 130 140 150
CHAIAAHSFS AQIAPLTTEA KIVQDADRLE ALGAIGLARV FAVSGALGVA
160 170 180 190 200
LFDGEDPFAQ HRPLDDKRYA LDHFQTKLLK LPQTMQTARG KQLAQHNAHF
210 220 230
LVEFMAKLSA ELAGENEGVD HKVIDAFSSA G
Length:231
Mass (Da):25,904
Last modified:November 1, 1997 - v2
Checksum:i231A38356D16D89A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75028.1.
AP009048 Genomic DNA. Translation: BAA15790.1.
X13330 Genomic DNA. No translation available.
PIRiF64960.
RefSeqiNP_416471.1. NC_000913.3.
WP_000365562.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75028; AAC75028; b1962.
BAA15790; BAA15790; BAA15790.
GeneIDi946478.
KEGGiecj:JW1945.
eco:b1962.
PATRICi32119253. VBIEscCol129921_2041.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75028.1.
AP009048 Genomic DNA. Translation: BAA15790.1.
X13330 Genomic DNA. No translation available.
PIRiF64960.
RefSeqiNP_416471.1. NC_000913.3.
WP_000365562.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3GW7X-ray3.30A/B1-231[»]
ProteinModelPortaliP46144.
SMRiP46144. Positions 4-231.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259162. 13 interactions.
IntActiP46144. 13 interactions.
STRINGi511145.b1962.

Proteomic databases

PaxDbiP46144.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75028; AAC75028; b1962.
BAA15790; BAA15790; BAA15790.
GeneIDi946478.
KEGGiecj:JW1945.
eco:b1962.
PATRICi32119253. VBIEscCol129921_2041.

Organism-specific databases

EchoBASEiEB2572.
EcoGeneiEG12710. yedJ.

Phylogenomic databases

eggNOGiENOG4105EST. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000034253.
InParanoidiP46144.
KOiK06950.
OMAiCVAVEKN.
PhylomeDBiP46144.

Enzyme and pathway databases

BioCyciEcoCyc:EG12710-MONOMER.
ECOL316407:JW1945-MONOMER.
RETL1328306-WGS:GSTH-1406-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP46144.
PROiP46144.

Family and domain databases

Gene3Di1.10.3210.10. 2 hits.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
[Graphical view]
PfamiPF01966. HD. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEDJ_ECOLI
AccessioniPrimary (citable) accession number: P46144
Secondary accession number(s): P76333
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1997
Last modified: September 7, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.