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Protein

Uncharacterized protein YedJ

Gene

yedJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12710-MONOMER.
ECOL316407:JW1945-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YedJ
Gene namesi
Name:yedJ
Ordered Locus Names:b1962, JW1945
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12710. yedJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001690931 – 231Uncharacterized protein YedJAdd BLAST231

Proteomic databases

PaxDbiP46144.
PRIDEiP46144.

Interactioni

Protein-protein interaction databases

BioGridi4259162. 13 interactors.
IntActiP46144. 13 interactors.
STRINGi511145.b1962.

Structurei

Secondary structure

1231
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni5 – 7Combined sources3
Helixi8 – 10Combined sources3
Turni11 – 15Combined sources5
Helixi29 – 40Combined sources12
Turni41 – 43Combined sources3
Helixi50 – 57Combined sources8
Turni58 – 61Combined sources4
Helixi75 – 85Combined sources11
Turni86 – 90Combined sources5
Turni94 – 97Combined sources4
Turni100 – 102Combined sources3
Helixi103 – 105Combined sources3
Helixi118 – 126Combined sources9
Helixi128 – 131Combined sources4
Helixi133 – 146Combined sources14
Helixi153 – 159Combined sources7
Helixi170 – 174Combined sources5
Turni175 – 177Combined sources3
Helixi178 – 180Combined sources3
Turni181 – 184Combined sources4
Helixi188 – 212Combined sources25
Helixi224 – 227Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3GW7X-ray3.30A/B1-231[»]
ProteinModelPortaliP46144.
SMRiP46144.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP46144.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini26 – 132HDAdd BLAST107

Sequence similaritiesi

Contains 1 HD domain.Curated

Phylogenomic databases

eggNOGiENOG4105EST. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000034253.
InParanoidiP46144.
KOiK06950.
OMAiCVAVEKN.
PhylomeDBiP46144.

Family and domain databases

Gene3Di1.10.3210.10. 2 hits.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
[Graphical view]
PfamiPF01966. HD. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P46144-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLQHWQAQF ENWLKNHHQH QDAAHDVCHF RRVWATAQKL AADDDVDMLV
60 70 80 90 100
ILTACYFHDI VSLAKNHPQR QRSSILAAEE TRRLLREEFE QFPAEKIEAV
110 120 130 140 150
CHAIAAHSFS AQIAPLTTEA KIVQDADRLE ALGAIGLARV FAVSGALGVA
160 170 180 190 200
LFDGEDPFAQ HRPLDDKRYA LDHFQTKLLK LPQTMQTARG KQLAQHNAHF
210 220 230
LVEFMAKLSA ELAGENEGVD HKVIDAFSSA G
Length:231
Mass (Da):25,904
Last modified:November 1, 1997 - v2
Checksum:i231A38356D16D89A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75028.1.
AP009048 Genomic DNA. Translation: BAA15790.1.
X13330 Genomic DNA. No translation available.
PIRiF64960.
RefSeqiNP_416471.1. NC_000913.3.
WP_000365562.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75028; AAC75028; b1962.
BAA15790; BAA15790; BAA15790.
GeneIDi946478.
KEGGiecj:JW1945.
eco:b1962.
PATRICi32119253. VBIEscCol129921_2041.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75028.1.
AP009048 Genomic DNA. Translation: BAA15790.1.
X13330 Genomic DNA. No translation available.
PIRiF64960.
RefSeqiNP_416471.1. NC_000913.3.
WP_000365562.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3GW7X-ray3.30A/B1-231[»]
ProteinModelPortaliP46144.
SMRiP46144.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259162. 13 interactors.
IntActiP46144. 13 interactors.
STRINGi511145.b1962.

Proteomic databases

PaxDbiP46144.
PRIDEiP46144.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75028; AAC75028; b1962.
BAA15790; BAA15790; BAA15790.
GeneIDi946478.
KEGGiecj:JW1945.
eco:b1962.
PATRICi32119253. VBIEscCol129921_2041.

Organism-specific databases

EchoBASEiEB2572.
EcoGeneiEG12710. yedJ.

Phylogenomic databases

eggNOGiENOG4105EST. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000034253.
InParanoidiP46144.
KOiK06950.
OMAiCVAVEKN.
PhylomeDBiP46144.

Enzyme and pathway databases

BioCyciEcoCyc:EG12710-MONOMER.
ECOL316407:JW1945-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP46144.
PROiP46144.

Family and domain databases

Gene3Di1.10.3210.10. 2 hits.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
[Graphical view]
PfamiPF01966. HD. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEDJ_ECOLI
AccessioniPrimary (citable) accession number: P46144
Secondary accession number(s): P76333
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 107 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.