Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane protein YgbE

Gene

ygbE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12707-MONOMER.
ECOL316407:JW2719-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YgbE
Gene namesi
Name:ygbE
Ordered Locus Names:b2749, JW2719
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12707. ygbE.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 20CytoplasmicSequence analysisAdd BLAST20
Transmembranei21 – 43HelicalSequence analysisAdd BLAST23
Topological domaini44 – 52PeriplasmicSequence analysis9
Transmembranei53 – 75HelicalSequence analysisAdd BLAST23
Topological domaini76 – 86CytoplasmicSequence analysisAdd BLAST11
Transmembranei87 – 106HelicalSequence analysisAdd BLAST20
Topological domaini107PeriplasmicSequence analysis1

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001693111 – 107Inner membrane protein YgbEAdd BLAST107

Proteomic databases

PaxDbiP46141.
PRIDEiP46141.

Interactioni

Protein-protein interaction databases

BioGridi4262282. 13 interactors.
STRINGi511145.b2749.

Structurei

3D structure databases

ProteinModelPortaliP46141.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105N0Z. Bacteria.
ENOG4111VSF. LUCA.
HOGENOMiHOG000124080.
OMAiAVEEPTW.

Family and domain databases

InterProiIPR022721. DUF3561.
[Graphical view]
PfamiPF12084. DUF3561. 1 hit.
[Graphical view]
ProDomiPD070788. PD070788. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P46141-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNSHNITLT NNDSLTEDEE TTWSLPGAVV GFISWLFALA MPMLIYGSNT
60 70 80 90 100
LFFFIYTWPF FLALMPVAVV VGIALHSLMD GKLRYSIVFT LVTVGIMFGA

LFMWLLG
Length:107
Mass (Da):12,017
Last modified:November 1, 1997 - v2
Checksum:iE3ED0F889EA9C21F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti67 – 81VAVVV…SLMDG → SRSGGDCAAFIDGRK (PubMed:9278503).CuratedAdd BLAST15

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69259.1.
U00096 Genomic DNA. Translation: AAC75791.1.
AP009048 Genomic DNA. Translation: BAE76826.1.
M74586 Genomic DNA. No translation available.
PIRiA65056.
RefSeqiNP_417229.1. NC_000913.3.
WP_001246104.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75791; AAC75791; b2749.
BAE76826; BAE76826; BAE76826.
GeneIDi947268.
KEGGiecj:JW2719.
eco:b2749.
PATRICi32120904. VBIEscCol129921_2844.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69259.1.
U00096 Genomic DNA. Translation: AAC75791.1.
AP009048 Genomic DNA. Translation: BAE76826.1.
M74586 Genomic DNA. No translation available.
PIRiA65056.
RefSeqiNP_417229.1. NC_000913.3.
WP_001246104.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP46141.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262282. 13 interactors.
STRINGi511145.b2749.

Proteomic databases

PaxDbiP46141.
PRIDEiP46141.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75791; AAC75791; b2749.
BAE76826; BAE76826; BAE76826.
GeneIDi947268.
KEGGiecj:JW2719.
eco:b2749.
PATRICi32120904. VBIEscCol129921_2844.

Organism-specific databases

EchoBASEiEB2569.
EcoGeneiEG12707. ygbE.

Phylogenomic databases

eggNOGiENOG4105N0Z. Bacteria.
ENOG4111VSF. LUCA.
HOGENOMiHOG000124080.
OMAiAVEEPTW.

Enzyme and pathway databases

BioCyciEcoCyc:EG12707-MONOMER.
ECOL316407:JW2719-MONOMER.

Miscellaneous databases

PROiP46141.

Family and domain databases

InterProiIPR022721. DUF3561.
[Graphical view]
PfamiPF12084. DUF3561. 1 hit.
[Graphical view]
ProDomiPD070788. PD070788. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYGBE_ECOLI
AccessioniPrimary (citable) accession number: P46141
Secondary accession number(s): Q2MA80, Q46895
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.