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Protein

Uncharacterized protein YfiM

Gene

yfiM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12857-MONOMER.
ECOL316407:JW2570-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YfiM
Gene namesi
Name:yfiM
Ordered Locus Names:b2586, JW2570
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12857. yfiM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 107107Uncharacterized protein YfiMPRO_0000169269Add
BLAST

Proteomic databases

PaxDbiP46126.

Interactioni

Protein-protein interaction databases

BioGridi4260610. 41 interactions.
IntActiP46126. 2 interactions.
STRINGi511145.b2586.

Structurei

3D structure databases

ProteinModelPortaliP46126.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105T42. Bacteria.
COG5544. LUCA.
HOGENOMiHOG000123535.
InParanoidiP46126.
KOiK05811.
OMAiYDSREGG.
OrthoDBiEOG6CZQP2.

Family and domain databases

InterProiIPR018736. DUF2279_periplasmic_lipo.
IPR017028. UCP034456.
[Graphical view]
PfamiPF10043. DUF2279. 1 hit.
[Graphical view]
PIRSFiPIRSF034456. UCP034456. 1 hit.

Sequencei

Sequence statusi: Complete.

P46126-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRILFVCSLL LLSGCSHMAN DSWSGQDKAQ HFIASAMLSA AGNEYSQHQG
60 70 80 90 100
MSRDRSAMFG LMFSVSLGAS KELWDSRPEG SGWSWKDLAW DVAGASTGYT

VWQLTRH
Length:107
Mass (Da):11,805
Last modified:June 26, 2007 - v2
Checksum:iB20874118D4BBD0B
GO

Sequence cautioni

The sequence BAA16471.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence M58699 differs from that shown.Several sequencing errors.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75639.2.
AP009048 Genomic DNA. Translation: BAA16471.1. Different initiation.
M58699 Genomic DNA. No translation available.
X75467 Genomic DNA. No translation available.
X53027 Genomic DNA. No translation available.
PIRiA65037.
RefSeqiNP_417081.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC75639; AAC75639; b2586.
BAA16471; BAA16471; BAA16471.
GeneIDi947060.
KEGGiecj:JW2570.
eco:b2586.
PATRICi32120573. VBIEscCol129921_2689.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75639.2.
AP009048 Genomic DNA. Translation: BAA16471.1. Different initiation.
M58699 Genomic DNA. No translation available.
X75467 Genomic DNA. No translation available.
X53027 Genomic DNA. No translation available.
PIRiA65037.
RefSeqiNP_417081.2. NC_000913.3.

3D structure databases

ProteinModelPortaliP46126.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260610. 41 interactions.
IntActiP46126. 2 interactions.
STRINGi511145.b2586.

Proteomic databases

PaxDbiP46126.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75639; AAC75639; b2586.
BAA16471; BAA16471; BAA16471.
GeneIDi947060.
KEGGiecj:JW2570.
eco:b2586.
PATRICi32120573. VBIEscCol129921_2689.

Organism-specific databases

EchoBASEiEB2700.
EcoGeneiEG12857. yfiM.

Phylogenomic databases

eggNOGiENOG4105T42. Bacteria.
COG5544. LUCA.
HOGENOMiHOG000123535.
InParanoidiP46126.
KOiK05811.
OMAiYDSREGG.
OrthoDBiEOG6CZQP2.

Enzyme and pathway databases

BioCyciEcoCyc:EG12857-MONOMER.
ECOL316407:JW2570-MONOMER.

Miscellaneous databases

PROiP46126.

Family and domain databases

InterProiIPR018736. DUF2279_periplasmic_lipo.
IPR017028. UCP034456.
[Graphical view]
PfamiPF10043. DUF2279. 1 hit.
[Graphical view]
PIRSFiPIRSF034456. UCP034456. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Sequence and inactivation of the pss gene of Escherichia coli. Phosphatidylethanolamine may not be essential for cell viability."
    Dechavigny A., Heacock P.N., Dowhan W.
    J. Biol. Chem. 266:5323-5332(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-69.
  5. "A new gene located between pss and rrnG on the Escherichia coli chromosome."
    Seol W., Shatkin A.J.
    J. Bacteriol. 172:4745-4745(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 40-107.
    Strain: K12.
  6. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYFIM_ECOLI
AccessioniPrimary (citable) accession number: P46126
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: June 26, 2007
Last modified: January 20, 2016
This is version 96 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.