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Protein

Uncharacterized protein YbjC

Gene

ybjC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12842-MONOMER.
ECOL316407:JW0834-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbjC
Gene namesi
Name:ybjC
Ordered Locus Names:b0850, JW0834
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12842. ybjC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9595Uncharacterized protein YbjCPRO_0000168735Add
BLAST

Proteomic databases

PaxDbiP46119.

Interactioni

Protein-protein interaction databases

BioGridi4260656. 13 interactions.
STRINGi511145.b0850.

Structurei

3D structure databases

ProteinModelPortaliP46119.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105X20. Bacteria.
ENOG41125IT. LUCA.
HOGENOMiHOG000118238.
OMAiIGMMSLA.
OrthoDBiEOG6F55MM.

Family and domain databases

InterProiIPR010815. DUF1418.
[Graphical view]
PfamiPF07214. DUF1418. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P46119-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAIGKLPKG VLILEFIGMM LLAVALLSVS DSLSLPEPFS RPEVQILMIF
60 70 80 90
LGVLLMLPAA VVVILQVAKR LAPQLMNRPP QYSRSEREKD NDANH
Length:95
Mass (Da):10,521
Last modified:November 1, 1995 - v1
Checksum:i112AE90BD27A5967
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M13449 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73937.1.
AP009048 Genomic DNA. Translation: BAA35561.1.
U18655 Genomic DNA. No translation available.
PIRiB64823.
RefSeqiNP_415371.1. NC_000913.3.
WP_001201560.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73937; AAC73937; b0850.
BAA35561; BAA35561; BAA35561.
GeneIDi945481.
KEGGiecj:JW0834.
eco:b0850.
PATRICi32116905. VBIEscCol129921_0878.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M13449 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73937.1.
AP009048 Genomic DNA. Translation: BAA35561.1.
U18655 Genomic DNA. No translation available.
PIRiB64823.
RefSeqiNP_415371.1. NC_000913.3.
WP_001201560.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP46119.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260656. 13 interactions.
STRINGi511145.b0850.

Proteomic databases

PaxDbiP46119.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73937; AAC73937; b0850.
BAA35561; BAA35561; BAA35561.
GeneIDi945481.
KEGGiecj:JW0834.
eco:b0850.
PATRICi32116905. VBIEscCol129921_0878.

Organism-specific databases

EchoBASEiEB2691.
EcoGeneiEG12842. ybjC.

Phylogenomic databases

eggNOGiENOG4105X20. Bacteria.
ENOG41125IT. LUCA.
HOGENOMiHOG000118238.
OMAiIGMMSLA.
OrthoDBiEOG6F55MM.

Enzyme and pathway databases

BioCyciEcoCyc:EG12842-MONOMER.
ECOL316407:JW0834-MONOMER.

Miscellaneous databases

PROiP46119.

Family and domain databases

InterProiIPR010815. DUF1418.
[Graphical view]
PfamiPF07214. DUF1418. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Chatterjee P.K., Sternberg N.L.
    Submitted (DEC-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Cloning and expression of the glutaredoxin (grx) gene of Escherichia coli."
    Hoeoeg J.-O., von Bahr-Lindstroem H., Joernvall H., Holmgren A.
    Gene 43:13-21(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-41.
  6. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYBJC_ECOLI
AccessioniPrimary (citable) accession number: P46119
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: January 20, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.