P46019 (KPB2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 138.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Phosphorylase b kinase regulatory subunit alpha, liver isoform Short name=Phosphorylase kinase alpha L subunit | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1235 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. The alpha chain may bind calmodulin. |
| Enzyme regulation | By phosphorylation of various serine residues and by calcium. |
| Pathway | |
| Subunit structure | Hexadecamer of 4 heterotetramers, each composed of alpha, beta, gamma, and delta subunits. Alpha (PHKA1 or PHKA2) and beta (PHKB) are regulatory subunits, gamma (PHKG1 or PHKG2) is the catalytic subunit, and delta is calmodulin. |
| Subcellular location | Cell membrane; Lipid-anchor; Cytoplasmic side Potential. |
| Tissue specificity | Predominantly expressed in liver and other non-muscle tissues. |
| Post-translational modification | Although the final Cys may be farnesylated, the terminal tripeptide is probably not removed, and the C-terminus is not methylated By similarity. |
| Involvement in disease | Glycogen storage disease 9A (GSD9A) [MIM:306000]: A metabolic disorder resulting in a mild liver glycogenosis with clinical symptoms that include hepatomegaly, growth retardation, muscle weakness, elevation of glutamate-pyruvate transaminase and glutamate-oxaloacetate transaminase, hypercholesterolemia, hypertriglyceridemia, and fasting hyperketosis. Two subtypes are known: type 1 or classic type with no phosphorylase kinase activity in liver or erythrocytes, and type 2 or variant type with no phosphorylase kinase activity in liver, but normal activity in erythrocytes. Unlike other glycogenosis diseases, glycogen storage disease type 9A is generally a benign condition. Patients improve with age and are often asymptomatic as adults. Accurate diagnosis is therefore also of prognostic interest. |
| Sequence similarities | Belongs to the phosphorylase b kinase regulatory chain family. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1235 | 1235 | Phosphorylase b kinase regulatory subunit alpha, liver isoform | PRO_0000057730 | |||||
Regions | |||||||||
| Region | 807 – 837 | 31 | Calmodulin-binding Potential | ||||||
| Region | 1059 – 1099 | 41 | Calmodulin-binding Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 729 | 1 | Phosphoserine Ref.11 Ref.13 Ref.14 Ref.15 | ||||||
| Modified residue | 735 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 1015 | 1 | Phosphoserine Ref.11 Ref.12 Ref.14 | ||||||
| Modified residue | 1048 | 1 | Phosphothreonine By similarity | ||||||
| Lipidation | 1232 | 1 | S-farnesyl cysteine By similarity | ||||||
Natural variations | |||||||||
| Natural variant | 38 | 1 | E → Q. Corresponds to variant rs17313469 [ dbSNP | Ensembl ]. | VAR_024563 | |||||
| Natural variant | 120 | 1 | T → TYNTAT in GSD9A. | VAR_062393 | |||||
| Natural variant | 132 | 1 | H → P in GSD9A; type 2. Ref.18 | VAR_006177 | |||||
| Natural variant | 132 | 1 | H → Y in GSD9A; type 2. Ref.18 | VAR_006178 | |||||
| Natural variant | 141 | 1 | Missing in GSD9A; type 1. Ref.1 | VAR_006179 | |||||
| Natural variant | 186 | 1 | R → C in GSD9A; type 2. Ref.3 Ref.17 | VAR_006180 | |||||
| Natural variant | 186 | 1 | R → H in GSD9A; type 2. Ref.3 Ref.18 | VAR_006181 | |||||
| Natural variant | 189 – 190 | 2 | Missing in GSD9A; type 2. | VAR_012270 | |||||
| Natural variant | 189 | 1 | K → E in GSD9A; type 2. Ref.8 | VAR_012269 | |||||
| Natural variant | 193 | 1 | G → V in GSD9A; type 2. Ref.2 | VAR_012271 | |||||
| Natural variant | 251 | 1 | Missing in GSD9A; type 2. Ref.17 | VAR_006182 | |||||
| Natural variant | 295 | 1 | R → H in GSD9A; type 1 and type 2. Ref.3 | VAR_012272 | |||||
| Natural variant | 299 | 1 | D → G in GSD9A; type 2. Ref.18 Ref.19 | VAR_006183 | |||||
| Natural variant | 399 | 1 | P → S in GSD9A; type 1. Ref.8 | VAR_012273 | |||||
| Natural variant | 416 | 1 | G → R. Corresponds to variant rs16980929 [ dbSNP | Ensembl ]. | VAR_050518 | |||||
| Natural variant | 498 | 1 | P → L in GSD9A. Ref.19 | VAR_062394 | |||||
| Natural variant | 818 – 825 | 8 | Missing in GSD9A; type 1. | VAR_012274 | |||||
| Natural variant | 869 | 1 | P → R in GSD9A. Ref.19 | VAR_062395 | |||||
| Natural variant | 916 | 1 | R → W in GSD9A. Ref.19 | VAR_062396 | |||||
| Natural variant | 953 – 954 | 2 | NL → I in GSD9A; type 1. | VAR_012275 | |||||
| Natural variant | 1070 | 1 | Missing in GSD9A. Ref.19 | VAR_062397 | |||||
| Natural variant | 1111 | 1 | R → RTR in GSD9A; type 2. | VAR_006184 | |||||
| Natural variant | 1113 | 1 | M → I in GSD9A. Ref.19 | VAR_062398 | |||||
| Natural variant | 1114 | 1 | T → I in GSD9A; type 2. Ref.17 | VAR_006185 | |||||
| Natural variant | 1125 | 1 | E → K in GSD9A; type 1. Ref.3 | VAR_012276 | |||||
| Natural variant | 1205 | 1 | P → L in GSD9A; type 1. Ref.1 | VAR_006186 | |||||
| Natural variant | 1207 | 1 | G → W in GSD9A; type 1. Ref.8 | VAR_012277 | |||||
Experimental info | |||||||||
| Sequence conflict | 527 | 1 | Q → E in AAH14036. Ref.7 | ||||||
| Sequence conflict | 756 | 1 | G → S in AAH14036. Ref.7 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "X-linked liver phosphorylase kinase deficiency is associated with mutations in the human liver phosphorylase kinase alpha subunit." van den Berg I.E.T., van Beurden E.A.C.M., Malingre H.E.M., Ploos van Amstel H.K., Poll-The B.T., Smeitink J.A.M., Lamers W.H., Berger R. Am. J. Hum. Genet. 56:381-387(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANTS GSD9A PHE-141 DEL AND LEU-1205. Tissue: Liver. |
| [2] | "Isolation of cDNA encoding the human liver phosphorylase kinase alpha subunit (PHKA2) and identification of a missense mutation of the PHKA2 gene in a family with liver phosphorylase kinase deficiency." Hirono H., Hayasaka K., Sato W., Takahashi T., Takada G. Biochem. Mol. Biol. Int. 36:505-511(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT GSD9A VAL-193. Tissue: Liver. |
| [3] | "Complete genomic structure and mutational spectrum of PHKA2 in patients with X-linked liver glycogenosis type I and II." Hendrickx J., Lee P., Keating J.P., Carton D., Sardharwalla I.B., Tuchman M., Baussan C., Willems P.J. Am. J. Hum. Genet. 64:1541-1549(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS GSD9A CYS-186; HIS-186; 189-LYS-THR-190 DEL; HIS-295 AND LYS-1125. Tissue: Liver. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Hippocampus. |
| [5] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Colon. |
| [8] | "Variability of biochemical and clinical phenotype in X-linked liver glycogenosis with mutations in the phosphorylase kinase PHKA2 gene." Burwinkel B., Amat L., Gray R.G., Matsuo N., Muroya K., Narisawa K., Sokol R.J., Vilaseca M.A., Kilimann M.W. Hum. Genet. 102:423-429(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 178-206, VARIANTS GSD9A GLU-189; SER-399; 818-GLN--TYR-825 DEL; 953-ASN--LEU-954 DELINS ILE AND TRP-1207. |
| [9] | "X-linked liver glycogenosis: localization and isolation of a candidate gene." Hendrickx J., Coucke P., Bossuyt P., Wauters J., Raeymaekers P., Marchau F., Smit G.P., Stolte I., Sardharwalla I.B., Berthelot J. Hum. Mol. Genet. 2:583-589(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE OF 750-1126. Tissue: Liver. |
| [10] | "The multiphosphorylation domain of the phosphorylase kinase alpha M and alpha L subunits is a hotspot of differential mRNA processing and of molecular evolution." Wuellrich A., Hamacher C., Schneider A., Kilimann M.W. J. Biol. Chem. 268:23208-23214(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 977-1080. Tissue: Liver. |
| [11] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-729; SER-735 AND SER-1015, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1015, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-729, MASS SPECTROMETRY. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-729 AND SER-1015, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [15] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-729 AND SER-735, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [17] | "X-linked liver glycogenosis type II (XLG II) is caused by mutations in PHKA2, the gene encoding the liver alpha subunit of phosphorylase kinase." Hendrickx J., Dams E., Coucke P., Lee P., Fernandes J., Willems P.J. Hum. Mol. Genet. 5:649-652(1996) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS GSD9A CYS-186; THR-251 DEL; THR-ARG-1111 INS AND ILE-1114. |
| [18] | "Mutation hotspots in the PHKA2 gene in X-linked liver glycogenosis due to phosphorylase kinase deficiency with atypical activity in blood cells (XLG2)." Burwinkel B., Shin Y.S., Bakker H.D., Deutsch J., Lozano M.J., Maire I., Kilimann M.W. Hum. Mol. Genet. 5:653-658(1996) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS GSD9A PRO-132; TYR-132; HIS-186 AND GLY-299. |
| [19] | "Glycogen storage disease type IX: High variability in clinical phenotype." Beauchamp N.J., Dalton A., Ramaswami U., Niinikoski H., Mention K., Kenny P., Kolho K.L., Raiman J., Walter J., Treacy E., Tanner S., Sharrard M. Mol. Genet. Metab. 92:88-99(2007) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS GSD9A TYR-ASN-THR-ALA-THR-120 INS; GLY-299; LEU-498; ARG-869; TRP-916; ARG-1070 DEL AND ILE-1113. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X80497 mRNA. Translation: CAA56662.1. D38616 mRNA. Translation: BAA07606.1. AF044572 AF044571 Genomic DNA. Translation: AAD32846.1.AK289996 mRNA. Translation: BAF82685.1. AL096700, AL732509 Genomic DNA. Translation: CAB86408.2. AL732509, AL096700 Genomic DNA. Translation: CAI41680.1. CH471074 Genomic DNA. Translation: EAW98951.1. BC014036 mRNA. Translation: AAH14036.1. Y15154 Genomic DNA. Translation: CAA75421.1. X73875 mRNA. Translation: CAA52084.1. |
| IPI | IPI00004237. |
| RefSeq | NP_000283.1. NM_000292.2. |
| UniGene | Hs.54941. |
3D structure databases | |
| ProteinModelPortal | P46019. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P46019. 3 interactions. |
| MINT | MINT-1185164. |
| STRING | 9606.ENSP00000369274. |
PTM databases | |
| PhosphoSite | P46019. |
Polymorphism databases | |
| DMDM | 1170685. |
Proteomic databases | |
| PaxDb | P46019. |
| PRIDE | P46019. |
Protocols and materials databases | |
| DNASU | 5256. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000379942; ENSP00000369274; ENSG00000044446. |
| GeneID | 5256. |
| KEGG | hsa:5256. |
| UCSC | uc004cyv.4. human. |
Organism-specific databases | |
| CTD | 5256. |
| GeneCards | GC0XM018910. |
| H-InvDB | HIX0176778. |
| HGNC | HGNC:8926. PHKA2. |
| HPA | HPA002912. |
| MIM | 300798. gene. 306000. phenotype. |
| neXtProt | NX_P46019. |
| Orphanet | 264580. Glycogen storage disease due to liver phosphorylase kinase deficiency. |
| PharmGKB | PA33267. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG82518. |
| HOGENOM | HOG000231478. |
| HOVERGEN | HBG000273. |
| InParanoid | P46019. |
| KO | K07190. |
| OMA | SHHKQLT. |
| OrthoDB | EOG4ZPDTH. |
| PhylomeDB | P46019. |
Enzyme and pathway databases | |
| BioCyc | MetaCyc:HS00576-MONOMER. |
| Reactome | REACT_111217. Metabolism. |
| UniPathway | UPA00163. |
Gene expression databases | |
| Bgee | P46019. |
| CleanEx | HS_PHKA2. |
| Genevestigator | P46019. |
| GermOnline | ENSG00000044446. Homo sapiens. |
Family and domain databases | |
| Gene3D | 1.50.10.10. 1 hit. |
| InterPro | IPR008928. 6-hairpin_glycosidase-like. IPR012341. 6hp_glycosidase. IPR011613. Glyco_hydro_15. IPR008734. PHK_A/B_su. [Graphical view] |
| PANTHER | PTHR10749. PTHR10749. 1 hit. |
| Pfam | PF00723. Glyco_hydro_15. 1 hit. [Graphical view] |
| SUPFAM | SSF48208. Glyco_trans_6hp. 1 hit. |
| ProtoNet | Search... |
Other | |
| BindingDB | P46019. |
| ChEMBL | CHEMBL2906. |
| GenomeRNAi | 5256. |
| NextBio | 20304. |
| SOURCE | Search... |
Entry information
| Entry name | KPB2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P46019 Secondary accession number(s): A8K1T1 Q9UDA1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with
