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Protein

Protein FraH

Gene

fraH

Organism
Nostoc sp. (strain PCC 7120 / UTEX 2576)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Putative heterocyst to vegetative cell connection.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri4 – 4946DZANK-typeSequence analysisAdd
BLAST
Zinc fingeri18 – 4831Sequence analysisAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FraH
Gene namesi
Name:fraH
Ordered Locus Names:alr1603
OrganismiNostoc sp. (strain PCC 7120 / UTEX 2576)
Taxonomic identifieri103690 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaNostocalesNostocaceaeNostoc
Proteomesi
  • UP000002483 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 289289Protein FraHPRO_0000087331Add
BLAST

Expressioni

Keywords - Developmental stagei

Heterocyst

Interactioni

Protein-protein interaction databases

STRINGi103690.alr1603.

Structurei

3D structure databases

ProteinModelPortaliP46017.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini204 – 26057FHAPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi67 – 174108Pro-richPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 DZANK-type zinc finger.Sequence analysis
Contains 1 FHA domain.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri4 – 4946DZANK-typeSequence analysisAdd
BLAST
Zinc fingeri18 – 4831Sequence analysisAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG4105Q36. Bacteria.
COG1716. LUCA.
HOGENOMiHOG000035566.
OMAiAAFCGQC.
OrthoDBiEOG6SR96T.

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR025874. DZR.
IPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
[Graphical view]
PfamiPF12773. DZR. 1 hit.
PF00498. FHA. 1 hit.
[Graphical view]
SMARTiSM00240. FHA. 1 hit.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
PROSITEiPS50006. FHA_DOMAIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P46017-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIVCPNCNHP NPDGAVQCEA CYTPLPATSN CPNCGATVQS DAAFCGQCGF
60 70 80 90 100
NLHSVAAPAA TVATIAPDVP VEVPPLANPD PLLELLQPNA LGLDPVANEN
110 120 130 140 150
PPAPAPLPPT AVAAPPDATP VVVEVTPAPP PPEPVVVEAS IPTPPPEPVA
160 170 180 190 200
PPEPVPAVEP APAPETVVAA PPSPARTQLQ QITARLVHVQ SDQEIELPPS
210 220 230 240 250
LSVVHIGKPN DRIPPDVDVS GFANSEIVSR VHADIRLEGD AHYIEDVGSS
260 270 280
NGTYINNLPL LPGNRHRLRP GDRISLGKGD LVTFLFKLA
Length:289
Mass (Da):29,922
Last modified:November 1, 1995 - v1
Checksum:i47C9091E50B39716
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14553 Genomic DNA. Translation: AAA50356.1.
BA000019 Genomic DNA. Translation: BAB77969.1.
PIRiAE2006.
RefSeqiWP_010995772.1. NC_003272.1.

Genome annotation databases

EnsemblBacteriaiBAB77969; BAB77969; BAB77969.
KEGGiana:alr1603.
PATRICi22773238. VBINosSp37423_2099.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14553 Genomic DNA. Translation: AAA50356.1.
BA000019 Genomic DNA. Translation: BAB77969.1.
PIRiAE2006.
RefSeqiWP_010995772.1. NC_003272.1.

3D structure databases

ProteinModelPortaliP46017.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi103690.alr1603.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB77969; BAB77969; BAB77969.
KEGGiana:alr1603.
PATRICi22773238. VBINosSp37423_2099.

Phylogenomic databases

eggNOGiENOG4105Q36. Bacteria.
COG1716. LUCA.
HOGENOMiHOG000035566.
OMAiAAFCGQC.
OrthoDBiEOG6SR96T.

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR025874. DZR.
IPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
[Graphical view]
PfamiPF12773. DZR. 1 hit.
PF00498. FHA. 1 hit.
[Graphical view]
SMARTiSM00240. FHA. 1 hit.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
PROSITEiPS50006. FHA_DOMAIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Bacterial subtracted cDNA libraries containing genes involved in the differentiation of vegetative cells to heterocysts allow a new twist on an old method of isolating developmental genes."
    Bauer C.C., Scappino L., Haselkorn R.
    Submitted (SEP-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: PCC 7120 / UTEX 2576.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 7120 / UTEX 2576.

Entry informationi

Entry nameiFRAH_NOSS1
AccessioniPrimary (citable) accession number: P46017
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: December 9, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.