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Protein

Zinc finger transcription factor family protein 17

Gene

ztf-17

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. RNA polymerase II regulatory region sequence-specific DNA binding Source: WormBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger transcription factor family protein 17
Gene namesi
Name:ztf-17
ORF Names:T09A5.12
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940: Chromosome II

Organism-specific databases

WormBaseiT09A5.12; CE44970; WBGene00011639; ztf-17.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 705705Zinc finger transcription factor family protein 17PRO_0000065457Add
BLAST

Proteomic databases

PaxDbiP45972.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
eps-8G5ED333EBI-319208,EBI-2315916

Protein-protein interaction databases

DIPiDIP-25547N.
IntActiP45972. 9 interactions.
MINTiMINT-1096551.
STRINGi6239.T09A5.12.2.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG281463.
HOGENOMiHOG000016668.
InParanoidiP45972.
OMAiRETHAVE.
OrthoDBiEOG72NRQV.

Family and domain databases

Gene3Di3.30.160.60. 1 hit.
InterProiIPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P45972-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRYQASVYG DSYGNDYHLP VQGPSTIASS NGLRSQQSKI IKRPPTNYKS
60 70 80 90 100
IPACRLAPRR RLFVADGNGV QKSMTSSSGV TFPPPDYMKK MKENYESGKI
110 120 130 140 150
IYIRRNNPGM KGNQMTGRLT TINSSIRAPS YHATSMSAGS VTLDTSGSAP
160 170 180 190 200
KYVYRLPKAE YGNKFDENRP ASNMYVPAQE PPKQHFTTVP ACMSMGGEVV
210 220 230 240 250
FEEELDDEIA DLGADELTGD GFNADKSPKS ESPDPYLKSS GPLVQPCMTS
260 270 280 290 300
KSPSYNLLQR NRLQTSRFAC PQQDCFWRGT NEMSMKKHML VHGPKQPVIY
310 320 330 340 350
DKTGEAMKVQ LVQPKPKGVK CSECDTFAYS RPLLLRHMYD SHGIEAPLVK
360 370 380 390 400
RTFANREMLQ SWLDSLRETH AVEFVVSSGS KKWGRGLQVH YLTCSRSGDQ
410 420 430 440 450
KERPNKKYVR PPRPSIKCGR NCMAYLKIKQ NPTVSELQIE GCLHHSGHEI
460 470 480 490 500
DHTRMVLESN ELASIGAIVD AVNEGVDVLG NVETIRSYLG SSGRFRLVTE
510 520 530 540 550
NGLIEQMPIW FEQYHRDMAA FNGTGYRNNS GPIPITNPYL SMTMKPSING
560 570 580 590 600
NRRLPYSGMT IKKELESITM KKAVPIRFNG GQLQNLEMNS SIEEYDESKV
610 620 630 640 650
KIEMDDEDAL ATQSILKDDF EEFKTEDLFG LGGGDDEILC GGEEASGVTS
660 670 680 690 700
NIDGILAANL PDNFNDPLCG MDLATDFSGP FDDDVFDELL GLTNFNDRHN

NLNIS
Length:705
Mass (Da):78,529
Last modified:July 27, 2011 - v3
Checksum:i7684C556F2388B7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z36753 Genomic DNA. Translation: CAA85341.2.
PIRiT24727.
RefSeqiNP_495656.2. NM_063255.5.
UniGeneiCel.17333.

Genome annotation databases

EnsemblMetazoaiT09A5.12.1; T09A5.12.1; WBGene00011639.
T09A5.12.2; T09A5.12.2; WBGene00011639.
GeneIDi174269.
KEGGicel:CELE_T09A5.12.
UCSCiT09A5.12.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z36753 Genomic DNA. Translation: CAA85341.2.
PIRiT24727.
RefSeqiNP_495656.2. NM_063255.5.
UniGeneiCel.17333.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25547N.
IntActiP45972. 9 interactions.
MINTiMINT-1096551.
STRINGi6239.T09A5.12.2.

Proteomic databases

PaxDbiP45972.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT09A5.12.1; T09A5.12.1; WBGene00011639.
T09A5.12.2; T09A5.12.2; WBGene00011639.
GeneIDi174269.
KEGGicel:CELE_T09A5.12.
UCSCiT09A5.12.1. c. elegans.

Organism-specific databases

CTDi174269.
WormBaseiT09A5.12; CE44970; WBGene00011639; ztf-17.

Phylogenomic databases

eggNOGiNOG281463.
HOGENOMiHOG000016668.
InParanoidiP45972.
OMAiRETHAVE.
OrthoDBiEOG72NRQV.

Miscellaneous databases

NextBioi883307.

Family and domain databases

Gene3Di3.30.160.60. 1 hit.
InterProiIPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiZTF17_CAEEL
AccessioniPrimary (citable) accession number: P45972
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: July 27, 2011
Last modified: January 7, 2015
This is version 84 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.