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P45968 (YNZ8_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 91. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Chromo domain-containing protein T09A5.8
Gene names
ORF Names:T09A5.8
OrganismCaenorhabditis elegans [Reference proteome]
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length339 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Subcellular location

Nucleus Potential.

Sequence similarities

Contains 1 chromo domain.

Ontologies

Keywords
   Cellular componentNucleus
   LigandDNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processDNA methylation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentnucleus

Inferred from direct assay PubMed 24685137. Source: WormBase

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

methyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 339339Chromo domain-containing protein T09A5.8
PRO_0000080243

Regions

Domain24 – 8461Chromo

Sequences

Sequence LengthMass (Da)Tools
P45968 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: 9396D2A18C404241

FASTA33937,736
        10         20         30         40         50         60 
MSNEGSREES REPEAREGKS DEIFEVEKIL AHKVTDNLLV LQVRWLGYGA DEDTWEPEED 

        70         80         90        100        110        120 
LQECASEVVA EYYKKLKVTD KTELIELLQK QIKKNKSQKS KKRSKTVSDH ESNHDSDGSY 

       130        140        150        160        170        180 
GTPKTSKKSK KSAKNETPVS SKVPKVPTKA ALKSYEATVS GPVAPNNAKK AAMEVRDTRR 

       190        200        210        220        230        240 
NWLDEESSDD EAETTAPLSD VEKIASKVKV VKAVEEKAEE PVKRPSTPPK PREVVIKKDP 

       250        260        270        280        290        300 
SESPVASASS VIPTSKRKSI NAETSNGRQR TLAPPVIVKD ETTWTVDGIA RHTDVDNTKT 

       310        320        330 
KLILMTNSAT GERKVVEGRE AFELDGWALA KYLLDRCEF 

« Hide

References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z36753 Genomic DNA. Translation: CAA85339.1.
PIRT24725.
RefSeqNP_495652.1. NM_063251.6.
UniGeneCel.7475.

3D structure databases

ProteinModelPortalP45968.
SMRP45968. Positions 22-76.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP45968. 1 interaction.
STRING6239.T09A5.8.

Proteomic databases

PaxDbP45968.
PRIDEP45968.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaT09A5.8; T09A5.8; WBGene00011636.
GeneID174265.
KEGGcel:CELE_T09A5.8.
UCSCT09A5.8. c. elegans.

Organism-specific databases

CTD174265.
WormBaseT09A5.8; CE01089; WBGene00011636.

Phylogenomic databases

eggNOGNOG277048.
HOGENOMHOG000016666.
InParanoidP45968.
OMAYLLDRCE.
OrthoDBEOG7MD4T0.

Family and domain databases

InterProIPR001525. C5_MeTfrase.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR023779. Chromodomain_CS.
[Graphical view]
PANTHERPTHR10629. PTHR10629. 1 hit.
PfamPF00385. Chromo. 1 hit.
[Graphical view]
SMARTSM00298. CHROMO. 1 hit.
[Graphical view]
SUPFAMSSF54160. SSF54160. 1 hit.
PROSITEPS00598. CHROMO_1. 1 hit.
PS50013. CHROMO_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio883291.

Entry information

Entry nameYNZ8_CAEEL
AccessionPrimary (citable) accession number: P45968
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: June 11, 2014
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Relevant documents

SIMILARITY comments

Index of protein domains and families

Caenorhabditis elegans

Caenorhabditis elegans: entries, gene names and cross-references to WormBase