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Protein

Uncharacterized protein YrdD

Gene

yrdD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  • DNA topoisomerase type I activity Source: InterPro
  • iron ion binding Source: EcoCyc
  • single-stranded DNA binding Source: EcoCyc
  • zinc ion binding Source: EcoCyc

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7699-MONOMER.
ECOL316407:JW5949-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YrdD
Gene namesi
Name:yrdD
Ordered Locus Names:b3283, JW5949
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12841. yrdD.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 180180Uncharacterized protein YrdDPRO_0000169506Add
BLAST

Proteomic databases

PaxDbiP45771.
PRIDEiP45771.

Interactioni

Protein-protein interaction databases

BioGridi4259329. 70 interactions.
IntActiP45771. 7 interactions.
MINTiMINT-1244363.
STRINGi511145.b3283.

Structurei

3D structure databases

ProteinModelPortaliP45771.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_0656.1.Curated

Phylogenomic databases

eggNOGiENOG4108WI1. Bacteria.
COG0551. LUCA.
HOGENOMiHOG000270078.
InParanoidiP45771.
KOiK07479.
OMAiGRYGMFV.

Family and domain databases

InterProiIPR000380. Topo_IA.
IPR013498. Topo_IA_Znf.
[Graphical view]
PANTHERiPTHR11390. PTHR11390. 1 hit.
PfamiPF01396. zf-C4_Topoisom. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P45771-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKSALFTVR NNESCPKCGA ELVIRSGKHG PFLGCSQYPA CDYVRPLKSS
60 70 80 90 100
ADGHIVKVLE GQVCPACGAN LVLRQGRFGM FIGCINYPEC EHTELIDKPD
110 120 130 140 150
ETAITCPQCR TGHLVQRRSR YGKTFHSCDR YPECQFAINF KPIAGECPEC
160 170 180
HYPLLIEKKT AQGVKHFCAS KQCGKPVSAE
Length:180
Mass (Da):19,871
Last modified:October 11, 2004 - v2
Checksum:i5DD3C627D019AF31
GO

Sequence cautioni

The sequence AAA58080 differs from that shown. Reason: Frameshift at position 26. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58080.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48175.1.
AP009048 Genomic DNA. Translation: BAE78008.1.
PIRiF65120.
RefSeqiWP_001129722.1. NZ_LN832404.1.
YP_026210.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48175; AAT48175; b3283.
BAE78008; BAE78008; BAE78008.
GeneIDi947782.
KEGGiecj:JW5949.
eco:b3283.
PATRICi32122000. VBIEscCol129921_3377.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58080.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48175.1.
AP009048 Genomic DNA. Translation: BAE78008.1.
PIRiF65120.
RefSeqiWP_001129722.1. NZ_LN832404.1.
YP_026210.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP45771.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259329. 70 interactions.
IntActiP45771. 7 interactions.
MINTiMINT-1244363.
STRINGi511145.b3283.

Proteomic databases

PaxDbiP45771.
PRIDEiP45771.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48175; AAT48175; b3283.
BAE78008; BAE78008; BAE78008.
GeneIDi947782.
KEGGiecj:JW5949.
eco:b3283.
PATRICi32122000. VBIEscCol129921_3377.

Organism-specific databases

EchoBASEiEB2690.
EcoGeneiEG12841. yrdD.

Phylogenomic databases

eggNOGiENOG4108WI1. Bacteria.
COG0551. LUCA.
HOGENOMiHOG000270078.
InParanoidiP45771.
KOiK07479.
OMAiGRYGMFV.

Enzyme and pathway databases

BioCyciEcoCyc:G7699-MONOMER.
ECOL316407:JW5949-MONOMER.

Miscellaneous databases

PROiP45771.

Family and domain databases

InterProiIPR000380. Topo_IA.
IPR013498. Topo_IA_Znf.
[Graphical view]
PANTHERiPTHR11390. PTHR11390. 1 hit.
PfamiPF01396. zf-C4_Topoisom. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYRDD_ECOLI
AccessioniPrimary (citable) accession number: P45771
Secondary accession number(s): Q2M6U8, Q6BF39
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: October 11, 2004
Last modified: September 7, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.