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Protein

Uncharacterized protein YrdD

Gene

yrdD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

  • DNA topoisomerase type I activity Source: InterPro
  • iron ion binding Source: EcoCyc
  • single-stranded DNA binding Source: EcoCyc
  • zinc ion binding Source: EcoCyc

GO - Biological processi

Enzyme and pathway databases

BioCyciEcoCyc:G7699-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YrdD
Gene namesi
Name:yrdD
Ordered Locus Names:b3283, JW5949
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12841 yrdD

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001695061 – 180Uncharacterized protein YrdDAdd BLAST180

Proteomic databases

PaxDbiP45771
PRIDEiP45771

Interactioni

Protein-protein interaction databases

BioGridi4259329, 70 interactors
IntActiP45771, 7 interactors
STRINGi316385.ECDH10B_3458

Structurei

3D structure databases

ProteinModelPortaliP45771
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_0656.1.Curated

Phylogenomic databases

eggNOGiENOG4108WI1 Bacteria
COG0551 LUCA
HOGENOMiHOG000270078
InParanoidiP45771
KOiK07479
OMAiHYPECDY

Family and domain databases

InterProiView protein in InterPro
IPR000380 Topo_IA
IPR013498 Topo_IA_Znf
PANTHERiPTHR42785 PTHR42785, 3 hits
PfamiView protein in Pfam
PF01396 zf-C4_Topoisom, 4 hits

Sequencei

Sequence statusi: Complete.

P45771-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKSALFTVR NNESCPKCGA ELVIRSGKHG PFLGCSQYPA CDYVRPLKSS
60 70 80 90 100
ADGHIVKVLE GQVCPACGAN LVLRQGRFGM FIGCINYPEC EHTELIDKPD
110 120 130 140 150
ETAITCPQCR TGHLVQRRSR YGKTFHSCDR YPECQFAINF KPIAGECPEC
160 170 180
HYPLLIEKKT AQGVKHFCAS KQCGKPVSAE
Length:180
Mass (Da):19,871
Last modified:October 11, 2004 - v2
Checksum:i5DD3C627D019AF31
GO

Sequence cautioni

The sequence AAA58080 differs from that shown. Reason: Frameshift at position 26.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA Translation: AAA58080.1 Frameshift.
U00096 Genomic DNA Translation: AAT48175.1
AP009048 Genomic DNA Translation: BAE78008.1
PIRiF65120
RefSeqiWP_001129722.1, NZ_LN832404.1
YP_026210.1, NC_000913.3

Genome annotation databases

EnsemblBacteriaiAAT48175; AAT48175; b3283
BAE78008; BAE78008; BAE78008
GeneIDi947782
KEGGiecj:JW5949
eco:b3283
PATRICifig|1411691.4.peg.3448

Similar proteinsi

Entry informationi

Entry nameiYRDD_ECOLI
AccessioniPrimary (citable) accession number: P45771
Secondary accession number(s): Q2M6U8, Q6BF39
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: October 11, 2004
Last modified: April 25, 2018
This is version 115 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health