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Protein

Putative amino-acid ABC transporter-binding protein YhdW

Gene

yhdW

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Probably part of the binding-protein-dependent transport system YdhWXYZ for an amino acid.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Amino-acid transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:YHDW-MONOMER.
ECOL316407:JW3236-MONOMER.
RETL1328306-WGS:GSTH-1953-MONOMER.

Protein family/group databases

TCDBi3.A.1.3.26. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative amino-acid ABC transporter-binding protein YhdW
Gene namesi
Name:yhdW
Ordered Locus Names:b3268, JW3236
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12834. yhdW.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 341322Putative amino-acid ABC transporter-binding protein YhdWPRO_0000031774Add
BLAST

Proteomic databases

EPDiP45766.

Interactioni

Protein-protein interaction databases

BioGridi4263167. 6 interactions.
IntActiP45766. 1 interaction.
STRINGi316407.85676059.

Structurei

3D structure databases

ProteinModelPortaliP45766.
SMRiP45766. Positions 27-341.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000003595.
InParanoidiP45766.
KOiK09969.
OMAiTTWTINR.
PhylomeDBiP45766.

Family and domain databases

InterProiIPR018313. SBP_3_CS.
IPR001638. Solute-binding_3/MltF_N.
[Graphical view]
PfamiPF00497. SBP_bac_3. 1 hit.
[Graphical view]
SMARTiSM00062. PBPb. 1 hit.
[Graphical view]
PROSITEiPS01039. SBP_BACTERIAL_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P45766-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKMMIATLA AASVLLAVAN QAXAGATLDA VQKKGFVQCG ISDGLPGFSY
60 70 80 90 100
ADADGKFSGI DVDICRGVAA AVFGDDTKVK YTPLTAKERF TALQSGEVDL
110 120 130 140 150
LSRNTTWTSS RDAGMGMAFT GVTYYDGIGF LTHDKAGLKS AKELDGATVC
160 170 180 190 200
IQAGTDTELN VADYFKANNM KYTPVTFDRS DESAKALESG RCDTLASDQS
210 220 230 240 250
QLYALRIKLS NPAEWIVLPE VISKEPLGPV VRRGDDEWFS IVRWTLFAML
260 270 280 290 300
NAEEMGINSQ NVDEKAANPA TPDMAHLLGK EGDYGKDLKL DNKWAYNIIK
310 320 330 340
QVGNYSEIFE RNVGSESPLK IKRGQNNLWN NGGIQYAPPV R
Length:341
Mass (Da):37,021
Last modified:May 4, 2001 - v2
Checksum:i404FE51DB30FBB40
GO

Sequence cautioni

The sequence AAA58072.1 differs from that shown. Reason: Frameshift at position 23. Curated
The sequence U00096 differs from that shown. Reason: Frameshift at position 23. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58072.1. Frameshift.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE77309.1. Frameshift.
PIRiF65119.

Genome annotation databases

EnsemblBacteriaiBAE77309; BAE77309; BAE77309.
KEGGiecj:JW3236.
PATRICi48665997. VBIEscCol107702_3301.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58072.1. Frameshift.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE77309.1. Frameshift.
PIRiF65119.

3D structure databases

ProteinModelPortaliP45766.
SMRiP45766. Positions 27-341.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263167. 6 interactions.
IntActiP45766. 1 interaction.
STRINGi316407.85676059.

Protein family/group databases

TCDBi3.A.1.3.26. the atp-binding cassette (abc) superfamily.

Proteomic databases

EPDiP45766.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE77309; BAE77309; BAE77309.
KEGGiecj:JW3236.
PATRICi48665997. VBIEscCol107702_3301.

Organism-specific databases

EchoBASEiEB2683.
EcoGeneiEG12834. yhdW.

Phylogenomic databases

HOGENOMiHOG000003595.
InParanoidiP45766.
KOiK09969.
OMAiTTWTINR.
PhylomeDBiP45766.

Enzyme and pathway databases

BioCyciEcoCyc:YHDW-MONOMER.
ECOL316407:JW3236-MONOMER.
RETL1328306-WGS:GSTH-1953-MONOMER.

Miscellaneous databases

PROiP45766.

Family and domain databases

InterProiIPR018313. SBP_3_CS.
IPR001638. Solute-binding_3/MltF_N.
[Graphical view]
PfamiPF00497. SBP_bac_3. 1 hit.
[Graphical view]
SMARTiSM00062. PBPb. 1 hit.
[Graphical view]
PROSITEiPS01039. SBP_BACTERIAL_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography."
    Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.
    Electrophoresis 20:2181-2195(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY.
    Strain: B / BL21.
  4. Rudd K.E.
    Unpublished observations (JAN-2000)
    Cited for: CONCEPTUAL TRANSLATION.

Entry informationi

Entry nameiYHDW_ECOLI
AccessioniPrimary (citable) accession number: P45766
Secondary accession number(s): Q2M8U7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: May 4, 2001
Last modified: March 16, 2016
This is version 114 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.