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Protein

Uncharacterized protein StfP from lambdoid prophage e14 region

Gene

stfP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12877-MONOMER.
ECOL316407:JW1140-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein StfP from lambdoid prophage e14 region
Gene namesi
Name:stfP
Synonyms:ycfK
Ordered Locus Names:b1154, JW1140
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12877. stfP.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 209209Uncharacterized protein StfP from lambdoid prophage e14 regionPRO_0000168835Add
BLAST

Proteomic databases

PaxDbiP45581.
PRIDEiP45581.

Interactioni

Protein-protein interaction databases

BioGridi4262856. 14 interactions.
STRINGi511145.b1154.

Structurei

3D structure databases

ProteinModelPortaliP45581.
SMRiP45581. Positions 90-209.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YfdL and M.jannaschii MJ0347.Curated

Phylogenomic databases

eggNOGiENOG4105Y9F. Bacteria.
ENOG4112657. LUCA.
HOGENOMiHOG000267967.
InParanoidiP45581.
OrthoDBiEOG6VMTQ9.

Sequencei

Sequence statusi: Complete.

P45581-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHRIDTKTAQ KDKFGAGKNG FTRGNPQTGT PATDLDDDYF DMLQEELCSV
60 70 80 90 100
VEASGASLEK GRHDQLLTAL RALLLSRKNP FGDIKSDGTV QTALENLGLG
110 120 130 140 150
EGAKLNAATA TLGRTGFIAI PVMIGGIEQS VIIQWGWNAA KASASGGDGN
160 170 180 190 200
TVVFPVAFNN ACVAVVANYD NVSAPINAVA TGGYTTTSFL LRCAAQTGSY

YYNWIAIGY
Length:209
Mass (Da):22,020
Last modified:November 1, 1997 - v2
Checksum:iE7396B126460B39B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74238.1.
AP009048 Genomic DNA. Translation: BAA35980.1.
X01805 Genomic DNA. No translation available.
PIRiG64860.
RefSeqiNP_415672.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC74238; AAC74238; b1154.
BAA35980; BAA35980; BAA35980.
GeneIDi945726.
KEGGiecj:JW1140.
eco:b1154.
PATRICi32117545. VBIEscCol129921_1195.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74238.1.
AP009048 Genomic DNA. Translation: BAA35980.1.
X01805 Genomic DNA. No translation available.
PIRiG64860.
RefSeqiNP_415672.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP45581.
SMRiP45581. Positions 90-209.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262856. 14 interactions.
STRINGi511145.b1154.

Proteomic databases

PaxDbiP45581.
PRIDEiP45581.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74238; AAC74238; b1154.
BAA35980; BAA35980; BAA35980.
GeneIDi945726.
KEGGiecj:JW1140.
eco:b1154.
PATRICi32117545. VBIEscCol129921_1195.

Organism-specific databases

EchoBASEiEB2715.
EcoGeneiEG12877. stfP.

Phylogenomic databases

eggNOGiENOG4105Y9F. Bacteria.
ENOG4112657. LUCA.
HOGENOMiHOG000267967.
InParanoidiP45581.
OrthoDBiEOG6VMTQ9.

Enzyme and pathway databases

BioCyciEcoCyc:EG12877-MONOMER.
ECOL316407:JW1140-MONOMER.

Miscellaneous databases

PROiP45581.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "The invertible P-DNA segment in the chromosome of Escherichia coli."
    Plasterk R.H.A., van de Putte P.
    EMBO J. 4:237-242(1985) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 98-209.
    Strain: K12.
  5. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiSTFP_ECOLI
AccessioniPrimary (citable) accession number: P45581
Secondary accession number(s): P75983
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1997
Last modified: January 20, 2016
This is version 91 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.