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Protein

Uncharacterized oxidoreductase YbdH

Gene

ybdH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi173 – 1731Zinc; catalyticBy similarity
Metal bindingi257 – 2571Zinc; catalyticBy similarity
Metal bindingi274 – 2741Zinc; catalyticBy similarity

GO - Molecular functioni

  • identical protein binding Source: IntAct
  • metal ion binding Source: UniProtKB-KW
  • oxidoreductase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciEcoCyc:EG12692-MONOMER.
ECOL316407:JW0592-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized oxidoreductase YbdH (EC:1.1.-.-)
Gene namesi
Name:ybdH
Ordered Locus Names:b0599, JW0592
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12692. ybdH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 362362Uncharacterized oxidoreductase YbdHPRO_0000087831Add
BLAST

Proteomic databases

PaxDbiP45579.
PRIDEiP45579.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
itself3EBI-553586,EBI-553586
yeiWP0AFT83EBI-553586,EBI-8767954

GO - Molecular functioni

  • identical protein binding Source: IntAct

Protein-protein interaction databases

BioGridi4259892. 10 interactions.
DIPiDIP-11347N.
IntActiP45579. 11 interactions.
MINTiMINT-1302765.
STRINGi511145.b0599.

Structurei

3D structure databases

ProteinModelPortaliP45579.
SMRiP45579. Positions 7-360.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4107SCQ. Bacteria.
COG0371. LUCA.
HOGENOMiHOG000031783.
InParanoidiP45579.
KOiK08317.
OMAiVPGPANY.
OrthoDBiEOG67432X.
PhylomeDBiP45579.

Family and domain databases

InterProiIPR001670. ADH_Fe.
IPR018211. ADH_Fe_CS.
[Graphical view]
PfamiPF00465. Fe-ADH. 1 hit.
[Graphical view]
PROSITEiPS00913. ADH_IRON_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P45579-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPHNPIRVVV GPANYFSHPG SFNHLHDFFT DEQLSRAVWI YGKRAIAAAQ
60 70 80 90 100
TKLPPAFGLP GAKHILFRGH CSESDVQQLA AESGDDRSVV IGVGGGALLD
110 120 130 140 150
TAKALARRLG LPFVAVPTIA ATCAAWTPLS VWYNDAGQAL HYEIFDDANF
160 170 180 190 200
MVLVEPEIIL NAPQQYLLAG IGDTLAKWYE AVVLAPQPET LPLTVRLGIN
210 220 230 240 250
NAQAIRDVLL NSSEQALSDQ QNQQLTQSFC DVVDAIIAGG GMVGGLGDRF
260 270 280 290 300
TRVAAAHAVH NGLTVLPQTE KFLHGTKVAY GILVQSALLG QDDVLAQLTG
310 320 330 340 350
AYQRFHLPTT LAELEVDINN QAEIDKVIAH TLRPVESIHY LPVTLTPDTL
360
RAAFKKVESF KA
Length:362
Mass (Da):39,092
Last modified:November 1, 1997 - v2
Checksum:iC28BBB4F8F247AE2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40800.1.
U00096 Genomic DNA. Translation: AAC73700.1.
AP009048 Genomic DNA. Translation: BAA35229.1.
X52904 Genomic DNA. No translation available.
PIRiE64793.
RefSeqiNP_415132.1. NC_000913.3.
WP_001120441.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73700; AAC73700; b0599.
BAA35229; BAA35229; BAA35229.
GeneIDi945212.
KEGGiecj:JW0592.
eco:b0599.
PATRICi32116376. VBIEscCol129921_0628.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40800.1.
U00096 Genomic DNA. Translation: AAC73700.1.
AP009048 Genomic DNA. Translation: BAA35229.1.
X52904 Genomic DNA. No translation available.
PIRiE64793.
RefSeqiNP_415132.1. NC_000913.3.
WP_001120441.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP45579.
SMRiP45579. Positions 7-360.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259892. 10 interactions.
DIPiDIP-11347N.
IntActiP45579. 11 interactions.
MINTiMINT-1302765.
STRINGi511145.b0599.

Proteomic databases

PaxDbiP45579.
PRIDEiP45579.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73700; AAC73700; b0599.
BAA35229; BAA35229; BAA35229.
GeneIDi945212.
KEGGiecj:JW0592.
eco:b0599.
PATRICi32116376. VBIEscCol129921_0628.

Organism-specific databases

EchoBASEiEB2555.
EcoGeneiEG12692. ybdH.

Phylogenomic databases

eggNOGiENOG4107SCQ. Bacteria.
COG0371. LUCA.
HOGENOMiHOG000031783.
InParanoidiP45579.
KOiK08317.
OMAiVPGPANY.
OrthoDBiEOG67432X.
PhylomeDBiP45579.

Enzyme and pathway databases

BioCyciEcoCyc:EG12692-MONOMER.
ECOL316407:JW0592-MONOMER.

Miscellaneous databases

PROiP45579.

Family and domain databases

InterProiIPR001670. ADH_Fe.
IPR018211. ADH_Fe_CS.
[Graphical view]
PfamiPF00465. Fe-ADH. 1 hit.
[Graphical view]
PROSITEiPS00913. ADH_IRON_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Molecular and functional characterization of a carbon starvation gene of Escherichia coli."
    Schultz J.E., Matin A.
    J. Mol. Biol. 218:129-140(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 282-362.
    Strain: K12.
  6. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYBDH_ECOLI
AccessioniPrimary (citable) accession number: P45579
Secondary accession number(s): P77632
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1997
Last modified: March 16, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.