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Protein

Inner membrane protein YbcI

Gene

ybcI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12708-MONOMER.
ECOL316407:JW0516-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbcI
Gene namesi
Name:ybcI
Ordered Locus Names:b0527, JW0516
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12708. ybcI.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1212CytoplasmicSequence analysisAdd
BLAST
Transmembranei13 – 3523HelicalSequence analysisAdd
BLAST
Topological domaini36 – 5419PeriplasmicSequence analysisAdd
BLAST
Transmembranei55 – 7723HelicalSequence analysisAdd
BLAST
Topological domaini78 – 836CytoplasmicSequence analysis
Transmembranei84 – 10320HelicalSequence analysisAdd
BLAST
Topological domaini104 – 14744PeriplasmicSequence analysisAdd
BLAST
Transmembranei148 – 17023HelicalSequence analysisAdd
BLAST
Topological domaini171 – 1733CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 173173Inner membrane protein YbcIPRO_0000168648Add
BLAST

Proteomic databases

PaxDbiP45570.

Interactioni

Protein-protein interaction databases

BioGridi4260967. 10 interactions.
STRINGi511145.b0527.

Structurei

3D structure databases

ProteinModelPortaliP45570.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105S2T. Bacteria.
COG1988. LUCA.
HOGENOMiHOG000280460.
InParanoidiP45570.
KOiK07038.
OMAiTVWIPLL.
PhylomeDBiP45570.

Family and domain databases

InterProiIPR007404. YdjM-like.
[Graphical view]
PfamiPF04307. YdjM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P45570-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTVITHAAV PLCIGLGLGS KVIPPRLLFA GIILAMLPDA DVLSFKFGVA
60 70 80 90 100
YGNVFGHRGF THSLVFAFVV PLLCVFIGRR WFRAGLIRCW LFLTVSLLSH
110 120 130 140 150
SLLDSVTTGG KGVGWLWPWS DERFFAPWQV IKVAPFALSR YTTPYGHQVI
160 170
ISELMWVWLP GMLLMGMLWW RRR
Length:173
Mass (Da):19,530
Last modified:November 1, 1995 - v1
Checksum:i68055C4226429356
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40280.1.
U00096 Genomic DNA. Translation: AAC73629.1.
AP009048 Genomic DNA. Translation: BAE76304.1.
D10588 Genomic DNA. No translation available.
X59293 Genomic DNA. No translation available.
PIRiF64784.
RefSeqiNP_415060.1. NC_000913.3.
WP_001143542.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73629; AAC73629; b0527.
BAE76304; BAE76304; BAE76304.
GeneIDi945155.
KEGGiecj:JW0516.
eco:b0527.
PATRICi32116214. VBIEscCol129921_0548.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40280.1.
U00096 Genomic DNA. Translation: AAC73629.1.
AP009048 Genomic DNA. Translation: BAE76304.1.
D10588 Genomic DNA. No translation available.
X59293 Genomic DNA. No translation available.
PIRiF64784.
RefSeqiNP_415060.1. NC_000913.3.
WP_001143542.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP45570.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260967. 10 interactions.
STRINGi511145.b0527.

Proteomic databases

PaxDbiP45570.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73629; AAC73629; b0527.
BAE76304; BAE76304; BAE76304.
GeneIDi945155.
KEGGiecj:JW0516.
eco:b0527.
PATRICi32116214. VBIEscCol129921_0548.

Organism-specific databases

EchoBASEiEB2570.
EcoGeneiEG12708. ybcI.

Phylogenomic databases

eggNOGiENOG4105S2T. Bacteria.
COG1988. LUCA.
HOGENOMiHOG000280460.
InParanoidiP45570.
KOiK07038.
OMAiTVWIPLL.
PhylomeDBiP45570.

Enzyme and pathway databases

BioCyciEcoCyc:EG12708-MONOMER.
ECOL316407:JW0516-MONOMER.

Miscellaneous databases

PROiP45570.

Family and domain databases

InterProiIPR007404. YdjM-like.
[Graphical view]
PfamiPF04307. YdjM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBCI_ECOLI
AccessioniPrimary (citable) accession number: P45570
Secondary accession number(s): Q2MBQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: September 7, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.