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Protein

Uncharacterized protein YhfX

Gene

yhfX

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7733-MONOMER.
ECOL316407:JW3344-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YhfX
Gene namesi
Name:yhfX
Ordered Locus Names:b3381, JW3344
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12919. yhfX.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 387387Uncharacterized protein YhfXPRO_0000169533Add
BLAST

Proteomic databases

PaxDbiP45550.
PRIDEiP45550.

Interactioni

Protein-protein interaction databases

BioGridi4262089. 122 interactions.
IntActiP45550. 2 interactions.
STRINGi511145.b3381.

Structurei

Secondary structure

1
387
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 97Combined sources
Helixi11 – 2212Combined sources
Beta strandi28 – 347Combined sources
Helixi35 – 5218Combined sources
Helixi61 – 633Combined sources
Helixi67 – 748Combined sources
Turni75 – 773Combined sources
Beta strandi81 – 855Combined sources
Helixi86 – 949Combined sources
Beta strandi99 – 1068Combined sources
Helixi110 – 1123Combined sources
Helixi113 – 1197Combined sources
Beta strandi121 – 1288Combined sources
Helixi129 – 14113Combined sources
Beta strandi146 – 1538Combined sources
Beta strandi166 – 1683Combined sources
Helixi169 – 1713Combined sources
Helixi172 – 18110Combined sources
Beta strandi185 – 1917Combined sources
Beta strandi195 – 1995Combined sources
Turni200 – 2034Combined sources
Beta strandi204 – 2074Combined sources
Helixi209 – 22214Combined sources
Turni223 – 2253Combined sources
Beta strandi229 – 2324Combined sources
Turni239 – 2413Combined sources
Helixi242 – 2476Combined sources
Helixi257 – 2604Combined sources
Helixi264 – 2663Combined sources
Beta strandi271 – 2733Combined sources
Beta strandi277 – 28711Combined sources
Beta strandi290 – 2945Combined sources
Beta strandi306 – 3116Combined sources
Turni312 – 3154Combined sources
Beta strandi316 – 3227Combined sources
Beta strandi332 – 3387Combined sources
Beta strandi345 – 3484Combined sources
Helixi354 – 3563Combined sources
Beta strandi360 – 3656Combined sources
Helixi367 – 3693Combined sources
Beta strandi373 – 3786Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KBXX-ray1.60A2-387[»]
ProteinModelPortaliP45550.
SMRiP45550. Positions 1-386.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108626. Bacteria.
COG3457. LUCA.
HOGENOMiHOG000125475.
OMAiMTKQVGR.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
SUPFAMiSSF51419. SSF51419. 1 hit.

Sequencei

Sequence statusi: Complete.

P45550-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFVEALKRQN PALISAALSL WQQGKIAPDS WVIDVDQILE NGKRLIETAR
60 70 80 90 100
LYGIELYLMT KQFGRNPWLA EKLLALGYSG IVAVDYKEAR VMRRAGLPVA
110 120 130 140 150
HQGHLVQIPC HQVADAVEQG TDVITVFTLD KAREVSAAAV KAGRIQSVLL
160 170 180 190 200
KVYSDDDFLY PGQESGFALK VLPEIVAEIQ NLPGLHLAGL THFPCLLWDE
210 220 230 240 250
AVGKVLPTPN LHTLIQARDQ LAKSGIALEQ LNAPSATSCT SLPLLAQYGV
260 270 280 290 300
THAEPGHALT GTIPANQQGD QPERIAMLWL SEISHHFRGD SYCYGGGYYR
310 320 330 340 350
RGHAQHALVF TPENQKITET NLKTVDDSSI DYTLPLAGEF PVSSAVVLCF
360 370 380
RTQIFVTRSD VVLVSGIHRG EPEIVGRYDS LGNSLGA
Length:387
Mass (Da):42,294
Last modified:November 1, 1995 - v1
Checksum:iEEF7881399ED5971
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58178.1.
U00096 Genomic DNA. Translation: AAC76406.1.
AP009048 Genomic DNA. Translation: BAE77910.1.
PIRiH65132.
RefSeqiNP_417840.1. NC_000913.3.
WP_000497334.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76406; AAC76406; b3381.
BAE77910; BAE77910; BAE77910.
GeneIDi947889.
KEGGiecj:JW3344.
eco:b3381.
PATRICi32122194. VBIEscCol129921_3474.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58178.1.
U00096 Genomic DNA. Translation: AAC76406.1.
AP009048 Genomic DNA. Translation: BAE77910.1.
PIRiH65132.
RefSeqiNP_417840.1. NC_000913.3.
WP_000497334.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KBXX-ray1.60A2-387[»]
ProteinModelPortaliP45550.
SMRiP45550. Positions 1-386.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262089. 122 interactions.
IntActiP45550. 2 interactions.
STRINGi511145.b3381.

Proteomic databases

PaxDbiP45550.
PRIDEiP45550.

Protocols and materials databases

DNASUi947889.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76406; AAC76406; b3381.
BAE77910; BAE77910; BAE77910.
GeneIDi947889.
KEGGiecj:JW3344.
eco:b3381.
PATRICi32122194. VBIEscCol129921_3474.

Organism-specific databases

EchoBASEiEB2755.
EcoGeneiEG12919. yhfX.

Phylogenomic databases

eggNOGiENOG4108626. Bacteria.
COG3457. LUCA.
HOGENOMiHOG000125475.
OMAiMTKQVGR.

Enzyme and pathway databases

BioCyciEcoCyc:G7733-MONOMER.
ECOL316407:JW3344-MONOMER.

Miscellaneous databases

PROiP45550.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
SUPFAMiSSF51419. SSF51419. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYHFX_ECOLI
AccessioniPrimary (citable) accession number: P45550
Secondary accession number(s): Q2M746
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: September 7, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.