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Protein

Uncharacterized protein YhfX

Gene

yhfX

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7733-MONOMER.
ECOL316407:JW3344-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YhfX
Gene namesi
Name:yhfX
Ordered Locus Names:b3381, JW3344
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12919. yhfX.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001695331 – 387Uncharacterized protein YhfXAdd BLAST387

Proteomic databases

PaxDbiP45550.
PRIDEiP45550.

Interactioni

Protein-protein interaction databases

BioGridi4262089. 122 interactors.
IntActiP45550. 2 interactors.
STRINGi511145.b3381.

Structurei

Secondary structure

1387
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 9Combined sources7
Helixi11 – 22Combined sources12
Beta strandi28 – 34Combined sources7
Helixi35 – 52Combined sources18
Helixi61 – 63Combined sources3
Helixi67 – 74Combined sources8
Turni75 – 77Combined sources3
Beta strandi81 – 85Combined sources5
Helixi86 – 94Combined sources9
Beta strandi99 – 106Combined sources8
Helixi110 – 112Combined sources3
Helixi113 – 119Combined sources7
Beta strandi121 – 128Combined sources8
Helixi129 – 141Combined sources13
Beta strandi146 – 153Combined sources8
Beta strandi166 – 168Combined sources3
Helixi169 – 171Combined sources3
Helixi172 – 181Combined sources10
Beta strandi185 – 191Combined sources7
Beta strandi195 – 199Combined sources5
Turni200 – 203Combined sources4
Beta strandi204 – 207Combined sources4
Helixi209 – 222Combined sources14
Turni223 – 225Combined sources3
Beta strandi229 – 232Combined sources4
Turni239 – 241Combined sources3
Helixi242 – 247Combined sources6
Helixi257 – 260Combined sources4
Helixi264 – 266Combined sources3
Beta strandi271 – 273Combined sources3
Beta strandi277 – 287Combined sources11
Beta strandi290 – 294Combined sources5
Beta strandi306 – 311Combined sources6
Turni312 – 315Combined sources4
Beta strandi316 – 322Combined sources7
Beta strandi332 – 338Combined sources7
Beta strandi345 – 348Combined sources4
Helixi354 – 356Combined sources3
Beta strandi360 – 365Combined sources6
Helixi367 – 369Combined sources3
Beta strandi373 – 378Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KBXX-ray1.60A2-387[»]
ProteinModelPortaliP45550.
SMRiP45550.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108626. Bacteria.
COG3457. LUCA.
HOGENOMiHOG000125475.
OMAiMTKQVGR.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
SUPFAMiSSF51419. SSF51419. 1 hit.

Sequencei

Sequence statusi: Complete.

P45550-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFVEALKRQN PALISAALSL WQQGKIAPDS WVIDVDQILE NGKRLIETAR
60 70 80 90 100
LYGIELYLMT KQFGRNPWLA EKLLALGYSG IVAVDYKEAR VMRRAGLPVA
110 120 130 140 150
HQGHLVQIPC HQVADAVEQG TDVITVFTLD KAREVSAAAV KAGRIQSVLL
160 170 180 190 200
KVYSDDDFLY PGQESGFALK VLPEIVAEIQ NLPGLHLAGL THFPCLLWDE
210 220 230 240 250
AVGKVLPTPN LHTLIQARDQ LAKSGIALEQ LNAPSATSCT SLPLLAQYGV
260 270 280 290 300
THAEPGHALT GTIPANQQGD QPERIAMLWL SEISHHFRGD SYCYGGGYYR
310 320 330 340 350
RGHAQHALVF TPENQKITET NLKTVDDSSI DYTLPLAGEF PVSSAVVLCF
360 370 380
RTQIFVTRSD VVLVSGIHRG EPEIVGRYDS LGNSLGA
Length:387
Mass (Da):42,294
Last modified:November 1, 1995 - v1
Checksum:iEEF7881399ED5971
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58178.1.
U00096 Genomic DNA. Translation: AAC76406.1.
AP009048 Genomic DNA. Translation: BAE77910.1.
PIRiH65132.
RefSeqiNP_417840.1. NC_000913.3.
WP_000497334.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76406; AAC76406; b3381.
BAE77910; BAE77910; BAE77910.
GeneIDi947889.
KEGGiecj:JW3344.
eco:b3381.
PATRICi32122194. VBIEscCol129921_3474.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58178.1.
U00096 Genomic DNA. Translation: AAC76406.1.
AP009048 Genomic DNA. Translation: BAE77910.1.
PIRiH65132.
RefSeqiNP_417840.1. NC_000913.3.
WP_000497334.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KBXX-ray1.60A2-387[»]
ProteinModelPortaliP45550.
SMRiP45550.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262089. 122 interactors.
IntActiP45550. 2 interactors.
STRINGi511145.b3381.

Proteomic databases

PaxDbiP45550.
PRIDEiP45550.

Protocols and materials databases

DNASUi947889.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76406; AAC76406; b3381.
BAE77910; BAE77910; BAE77910.
GeneIDi947889.
KEGGiecj:JW3344.
eco:b3381.
PATRICi32122194. VBIEscCol129921_3474.

Organism-specific databases

EchoBASEiEB2755.
EcoGeneiEG12919. yhfX.

Phylogenomic databases

eggNOGiENOG4108626. Bacteria.
COG3457. LUCA.
HOGENOMiHOG000125475.
OMAiMTKQVGR.

Enzyme and pathway databases

BioCyciEcoCyc:G7733-MONOMER.
ECOL316407:JW3344-MONOMER.

Miscellaneous databases

PROiP45550.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
SUPFAMiSSF51419. SSF51419. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYHFX_ECOLI
AccessioniPrimary (citable) accession number: P45550
Secondary accession number(s): Q2M746
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: November 2, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.