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Protein

Uncharacterized protein YhfS

Gene

yhfS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7728-MONOMER.
ECOL316407:JW3339-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YhfS
Gene namesi
Name:yhfS
Ordered Locus Names:b3376, JW3339
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12914. yhfS.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 361361Uncharacterized protein YhfSPRO_0000169528Add
BLAST

Proteomic databases

PaxDbiP45545.
PRIDEiP45545.

Interactioni

Protein-protein interaction databases

BioGridi4261269. 140 interactions.
DIPiDIP-12328N.
IntActiP45545. 5 interactions.
STRINGi511145.b3376.

Structurei

Secondary structure

1
361
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi11 – 2818Combined sources
Helixi31 – 344Combined sources
Turni44 – 463Combined sources
Helixi50 – 6213Combined sources
Beta strandi66 – 727Combined sources
Helixi74 – 8613Combined sources
Beta strandi92 – 987Combined sources
Helixi102 – 11110Combined sources
Beta strandi114 – 1185Combined sources
Helixi123 – 13311Combined sources
Beta strandi136 – 1438Combined sources
Helixi153 – 16210Combined sources
Beta strandi167 – 1704Combined sources
Turni172 – 1776Combined sources
Helixi182 – 1843Combined sources
Beta strandi188 – 1947Combined sources
Helixi195 – 1973Combined sources
Beta strandi203 – 2086Combined sources
Helixi210 – 21910Combined sources
Turni223 – 2253Combined sources
Helixi229 – 26133Combined sources
Beta strandi268 – 28821Combined sources
Helixi290 – 29910Combined sources
Beta strandi303 – 3053Combined sources
Beta strandi307 – 3104Combined sources
Beta strandi318 – 3203Combined sources
Helixi324 – 3296Combined sources
Helixi333 – 3353Combined sources
Beta strandi337 – 3415Combined sources
Helixi347 – 36014Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4J8LX-ray1.65A2-361[»]
ProteinModelPortaliP45545.
SMRiP45545. Positions 1-361.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4106PKC. Bacteria.
ENOG410Z1QN. LUCA.
HOGENOMiHOG000125442.
OMAiRMIRINP.
OrthoDBiEOG6TR0BJ.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

P45545-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTFPLQSLT IIEAQQKQFA LVDSICRHFP GSEFLTGGDL GLTPGLNQPR
60 70 80 90 100
VTQRVEQVLA DAFHAQAAAL VQGAGTGAIR AGLAALLKPG QRLLVHDAPV
110 120 130 140 150
YPTTRVIIEQ MGLTLITVDF NDLSALKQVV DEQQPDAALV QHTRQQPQDS
160 170 180 190 200
YVLADVLATL RAAGVPALTD DNYAVMKVAR IGCECGANVS TFSCFKLFGP
210 220 230 240 250
EGVGAVVGDA DVINRIRATL YSGGSQIQGA QALEVLRGLV FAPVMHAVQA
260 270 280 290 300
GVSERLLALL NGGAVPEVKS AVIANAQSKV LIVEFHQPIA ARVLEEAQKR
310 320 330 340 350
GALPYPVGAE SKYEIPPLFY RLSGTFRQAN PQSEHCAIRI NPNRSGEETV
360
LRILRESIAS I
Length:361
Mass (Da):38,599
Last modified:November 1, 1995 - v1
Checksum:i53E152242AD1D95E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58173.1.
U00096 Genomic DNA. Translation: AAC76401.1.
AP009048 Genomic DNA. Translation: BAE77915.1.
PIRiC65132.
RefSeqiNP_417835.1. NC_000913.3.
WP_000847144.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76401; AAC76401; b3376.
BAE77915; BAE77915; BAE77915.
GeneIDi947884.
KEGGiecj:JW3339.
eco:b3376.
PATRICi32122184. VBIEscCol129921_3469.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58173.1.
U00096 Genomic DNA. Translation: AAC76401.1.
AP009048 Genomic DNA. Translation: BAE77915.1.
PIRiC65132.
RefSeqiNP_417835.1. NC_000913.3.
WP_000847144.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4J8LX-ray1.65A2-361[»]
ProteinModelPortaliP45545.
SMRiP45545. Positions 1-361.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261269. 140 interactions.
DIPiDIP-12328N.
IntActiP45545. 5 interactions.
STRINGi511145.b3376.

Proteomic databases

PaxDbiP45545.
PRIDEiP45545.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76401; AAC76401; b3376.
BAE77915; BAE77915; BAE77915.
GeneIDi947884.
KEGGiecj:JW3339.
eco:b3376.
PATRICi32122184. VBIEscCol129921_3469.

Organism-specific databases

EchoBASEiEB2750.
EcoGeneiEG12914. yhfS.

Phylogenomic databases

eggNOGiENOG4106PKC. Bacteria.
ENOG410Z1QN. LUCA.
HOGENOMiHOG000125442.
OMAiRMIRINP.
OrthoDBiEOG6TR0BJ.

Enzyme and pathway databases

BioCyciEcoCyc:G7728-MONOMER.
ECOL316407:JW3339-MONOMER.

Miscellaneous databases

PROiP45545.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYHFS_ECOLI
AccessioniPrimary (citable) accession number: P45545
Secondary accession number(s): Q2M741
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: April 13, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.