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Protein

Uncharacterized protein YhfS

Gene

yhfS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7728-MONOMER.
ECOL316407:JW3339-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YhfS
Gene namesi
Name:yhfS
Ordered Locus Names:b3376, JW3339
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12914. yhfS.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001695281 – 361Uncharacterized protein YhfSAdd BLAST361

Proteomic databases

PaxDbiP45545.
PRIDEiP45545.

Interactioni

Protein-protein interaction databases

BioGridi4261269. 140 interactors.
DIPiDIP-12328N.
IntActiP45545. 5 interactors.
STRINGi511145.b3376.

Structurei

Secondary structure

1361
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi11 – 28Combined sources18
Helixi31 – 34Combined sources4
Turni44 – 46Combined sources3
Helixi50 – 62Combined sources13
Beta strandi66 – 72Combined sources7
Helixi74 – 86Combined sources13
Beta strandi92 – 98Combined sources7
Helixi102 – 111Combined sources10
Beta strandi114 – 118Combined sources5
Helixi123 – 133Combined sources11
Beta strandi136 – 143Combined sources8
Helixi153 – 162Combined sources10
Beta strandi167 – 170Combined sources4
Turni172 – 177Combined sources6
Helixi182 – 184Combined sources3
Beta strandi188 – 194Combined sources7
Helixi195 – 197Combined sources3
Beta strandi203 – 208Combined sources6
Helixi210 – 219Combined sources10
Turni223 – 225Combined sources3
Helixi229 – 261Combined sources33
Beta strandi268 – 288Combined sources21
Helixi290 – 299Combined sources10
Beta strandi303 – 305Combined sources3
Beta strandi307 – 310Combined sources4
Beta strandi318 – 320Combined sources3
Helixi324 – 329Combined sources6
Helixi333 – 335Combined sources3
Beta strandi337 – 341Combined sources5
Helixi347 – 360Combined sources14

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4J8LX-ray1.65A2-361[»]
ProteinModelPortaliP45545.
SMRiP45545.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4106PKC. Bacteria.
ENOG410Z1QN. LUCA.
HOGENOMiHOG000125442.
OMAiRMIRINP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

P45545-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTFPLQSLT IIEAQQKQFA LVDSICRHFP GSEFLTGGDL GLTPGLNQPR
60 70 80 90 100
VTQRVEQVLA DAFHAQAAAL VQGAGTGAIR AGLAALLKPG QRLLVHDAPV
110 120 130 140 150
YPTTRVIIEQ MGLTLITVDF NDLSALKQVV DEQQPDAALV QHTRQQPQDS
160 170 180 190 200
YVLADVLATL RAAGVPALTD DNYAVMKVAR IGCECGANVS TFSCFKLFGP
210 220 230 240 250
EGVGAVVGDA DVINRIRATL YSGGSQIQGA QALEVLRGLV FAPVMHAVQA
260 270 280 290 300
GVSERLLALL NGGAVPEVKS AVIANAQSKV LIVEFHQPIA ARVLEEAQKR
310 320 330 340 350
GALPYPVGAE SKYEIPPLFY RLSGTFRQAN PQSEHCAIRI NPNRSGEETV
360
LRILRESIAS I
Length:361
Mass (Da):38,599
Last modified:November 1, 1995 - v1
Checksum:i53E152242AD1D95E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58173.1.
U00096 Genomic DNA. Translation: AAC76401.1.
AP009048 Genomic DNA. Translation: BAE77915.1.
PIRiC65132.
RefSeqiNP_417835.1. NC_000913.3.
WP_000847144.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76401; AAC76401; b3376.
BAE77915; BAE77915; BAE77915.
GeneIDi947884.
KEGGiecj:JW3339.
eco:b3376.
PATRICi32122184. VBIEscCol129921_3469.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58173.1.
U00096 Genomic DNA. Translation: AAC76401.1.
AP009048 Genomic DNA. Translation: BAE77915.1.
PIRiC65132.
RefSeqiNP_417835.1. NC_000913.3.
WP_000847144.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4J8LX-ray1.65A2-361[»]
ProteinModelPortaliP45545.
SMRiP45545.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261269. 140 interactors.
DIPiDIP-12328N.
IntActiP45545. 5 interactors.
STRINGi511145.b3376.

Proteomic databases

PaxDbiP45545.
PRIDEiP45545.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76401; AAC76401; b3376.
BAE77915; BAE77915; BAE77915.
GeneIDi947884.
KEGGiecj:JW3339.
eco:b3376.
PATRICi32122184. VBIEscCol129921_3469.

Organism-specific databases

EchoBASEiEB2750.
EcoGeneiEG12914. yhfS.

Phylogenomic databases

eggNOGiENOG4106PKC. Bacteria.
ENOG410Z1QN. LUCA.
HOGENOMiHOG000125442.
OMAiRMIRINP.

Enzyme and pathway databases

BioCyciEcoCyc:G7728-MONOMER.
ECOL316407:JW3339-MONOMER.

Miscellaneous databases

PROiP45545.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYHFS_ECOLI
AccessioniPrimary (citable) accession number: P45545
Secondary accession number(s): Q2M741
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: November 30, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.