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Protein

UPF0213 protein YhbQ

Gene

yhbQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7649-MONOMER.
ECOL316407:JW3124-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0213 protein YhbQUniRule annotation
Gene namesi
Name:yhbQUniRule annotation
Ordered Locus Names:b3155, JW3124
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12786. yhbQ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 100100UPF0213 protein YhbQPRO_0000161358Add
BLAST

Proteomic databases

PaxDbiP45472.
PRIDEiP45472.

Interactioni

Protein-protein interaction databases

BioGridi4259272. 84 interactions.
IntActiP45472. 13 interactions.
STRINGi511145.b3155.

Structurei

3D structure databases

ProteinModelPortaliP45472.
SMRiP45472. Positions 5-94.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 7776GIY-YIGUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0213 family.UniRule annotation
Contains 1 GIY-YIG domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG41082IR. Bacteria.
COG2827. LUCA.
HOGENOMiHOG000285485.
InParanoidiP45472.
KOiK07461.
OMAiALKWEYR.
PhylomeDBiP45472.

Family and domain databases

HAMAPiMF_01029. UPF0213. 1 hit.
InterProiIPR000305. GIY-YIG_SF.
IPR022992. UPF0213_GIY-YIG_endonuc.
[Graphical view]
PfamiPF01541. GIY-YIG. 1 hit.
[Graphical view]
SMARTiSM00465. GIYc. 1 hit.
[Graphical view]
SUPFAMiSSF82771. SSF82771. 1 hit.
PROSITEiPS50164. GIY_YIG. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P45472-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPWFLYLIR TADNKLYTGI TTDVERRYQQ HQSGKGAKAL RGKGELTLVF
60 70 80 90 100
SAPVGDRSLA LRAEYRVKQL TKRQKERLVA EGAGFAELLS SLQTPEIKSD
Length:100
Mass (Da):11,270
Last modified:November 1, 1995 - v1
Checksum:i21BA0C8F84A822EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57958.1.
U00096 Genomic DNA. Translation: AAC76189.1.
AP009048 Genomic DNA. Translation: BAE77201.1.
PIRiG65105.
RefSeqiNP_417624.1. NC_000913.3.
WP_000189333.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76189; AAC76189; b3155.
BAE77201; BAE77201; BAE77201.
GeneIDi947671.
KEGGiecj:JW3124.
eco:b3155.
PATRICi32121728. VBIEscCol129921_3250.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57958.1.
U00096 Genomic DNA. Translation: AAC76189.1.
AP009048 Genomic DNA. Translation: BAE77201.1.
PIRiG65105.
RefSeqiNP_417624.1. NC_000913.3.
WP_000189333.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP45472.
SMRiP45472. Positions 5-94.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259272. 84 interactions.
IntActiP45472. 13 interactions.
STRINGi511145.b3155.

Proteomic databases

PaxDbiP45472.
PRIDEiP45472.

Protocols and materials databases

DNASUi947671.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76189; AAC76189; b3155.
BAE77201; BAE77201; BAE77201.
GeneIDi947671.
KEGGiecj:JW3124.
eco:b3155.
PATRICi32121728. VBIEscCol129921_3250.

Organism-specific databases

EchoBASEiEB2639.
EcoGeneiEG12786. yhbQ.

Phylogenomic databases

eggNOGiENOG41082IR. Bacteria.
COG2827. LUCA.
HOGENOMiHOG000285485.
InParanoidiP45472.
KOiK07461.
OMAiALKWEYR.
PhylomeDBiP45472.

Enzyme and pathway databases

BioCyciEcoCyc:G7649-MONOMER.
ECOL316407:JW3124-MONOMER.

Miscellaneous databases

PROiP45472.

Family and domain databases

HAMAPiMF_01029. UPF0213. 1 hit.
InterProiIPR000305. GIY-YIG_SF.
IPR022992. UPF0213_GIY-YIG_endonuc.
[Graphical view]
PfamiPF01541. GIY-YIG. 1 hit.
[Graphical view]
SMARTiSM00465. GIYc. 1 hit.
[Graphical view]
SUPFAMiSSF82771. SSF82771. 1 hit.
PROSITEiPS50164. GIY_YIG. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYHBQ_ECOLI
AccessioniPrimary (citable) accession number: P45472
Secondary accession number(s): Q2M955
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: September 7, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.