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Protein

UPF0102 protein YraN

Gene

yraN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7643-MONOMER.
ECOL316407:JW3117-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0102 protein YraN
Gene namesi
Name:yraN
Ordered Locus Names:b3148, JW3117
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12779. yraN.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 131131UPF0102 protein YraNPRO_0000167349Add
BLAST

Proteomic databases

PaxDbiP45465.
PRIDEiP45465.

Interactioni

Protein-protein interaction databases

BioGridi4261990. 155 interactions.
DIPiDIP-12898N.
IntActiP45465. 21 interactions.
MINTiMINT-1244192.
STRINGi511145.b3148.

Structurei

3D structure databases

ProteinModelPortaliP45465.
SMRiP45465. Positions 24-118.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0102 family.Curated

Phylogenomic databases

eggNOGiENOG41082RQ. Bacteria.
COG0792. LUCA.
HOGENOMiHOG000016278.
InParanoidiP45465.
KOiK07460.
OMAiWRCKGGE.
PhylomeDBiP45465.

Family and domain databases

Gene3Di3.40.1350.10. 1 hit.
HAMAPiMF_00048. UPF0102. 1 hit.
InterProiIPR011335. Restrct_endonuc-II-like.
IPR011856. tRNA_endonuc-like_dom.
IPR003509. UPF0102.
[Graphical view]
PfamiPF02021. UPF0102. 1 hit.
[Graphical view]
SUPFAMiSSF52980. SSF52980. 1 hit.
TIGRFAMsiTIGR00252. TIGR00252. 1 hit.

Sequencei

Sequence statusi: Complete.

P45465-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATVPTRSGS PRQLTTKQTG DAWEAQARRW LEGKGLRFIA ANVNERGGEI
60 70 80 90 100
DLIMREGRTT IFVEVRYRRS ALYGGAAASV TRSKQHKLLQ TARLWLARHN
110 120 130
GSFDTVDCRF DVVAFTGNEV EWIKDAFNDH S
Length:131
Mass (Da):14,798
Last modified:November 1, 1995 - v1
Checksum:i6A1FE67748374475
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57951.1.
U00096 Genomic DNA. Translation: AAC76182.1.
AP009048 Genomic DNA. Translation: BAE77194.1.
PIRiH65104.
RefSeqiNP_417617.1. NC_000913.3.
WP_000246830.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76182; AAC76182; b3148.
BAE77194; BAE77194; BAE77194.
GeneIDi947662.
KEGGiecj:JW3117.
eco:b3148.
PATRICi32121714. VBIEscCol129921_3243.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57951.1.
U00096 Genomic DNA. Translation: AAC76182.1.
AP009048 Genomic DNA. Translation: BAE77194.1.
PIRiH65104.
RefSeqiNP_417617.1. NC_000913.3.
WP_000246830.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP45465.
SMRiP45465. Positions 24-118.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261990. 155 interactions.
DIPiDIP-12898N.
IntActiP45465. 21 interactions.
MINTiMINT-1244192.
STRINGi511145.b3148.

Proteomic databases

PaxDbiP45465.
PRIDEiP45465.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76182; AAC76182; b3148.
BAE77194; BAE77194; BAE77194.
GeneIDi947662.
KEGGiecj:JW3117.
eco:b3148.
PATRICi32121714. VBIEscCol129921_3243.

Organism-specific databases

EchoBASEiEB2632.
EcoGeneiEG12779. yraN.

Phylogenomic databases

eggNOGiENOG41082RQ. Bacteria.
COG0792. LUCA.
HOGENOMiHOG000016278.
InParanoidiP45465.
KOiK07460.
OMAiWRCKGGE.
PhylomeDBiP45465.

Enzyme and pathway databases

BioCyciEcoCyc:G7643-MONOMER.
ECOL316407:JW3117-MONOMER.

Miscellaneous databases

PROiP45465.

Family and domain databases

Gene3Di3.40.1350.10. 1 hit.
HAMAPiMF_00048. UPF0102. 1 hit.
InterProiIPR011335. Restrct_endonuc-II-like.
IPR011856. tRNA_endonuc-like_dom.
IPR003509. UPF0102.
[Graphical view]
PfamiPF02021. UPF0102. 1 hit.
[Graphical view]
SUPFAMiSSF52980. SSF52980. 1 hit.
TIGRFAMsiTIGR00252. TIGR00252. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYRAN_ECOLI
AccessioniPrimary (citable) accession number: P45465
Secondary accession number(s): Q2M962
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: September 7, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.