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Protein

Uncharacterized protein YhcF

Gene

yhcF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7673-MONOMER.
ECOL316407:JW3188-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YhcF
Gene namesi
Name:yhcF
Ordered Locus Names:b3219, JW3188
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12812. yhcF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Chaini21 – 238218Uncharacterized protein YhcFPRO_0000013920Add
BLAST

Proteomic databases

PaxDbiP45422.

Interactioni

Protein-protein interaction databases

BioGridi4262057. 14 interactions.
IntActiP45422. 2 interactions.
STRINGi511145.b3219.

Structurei

3D structure databases

ProteinModelPortaliP45422.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli GltF.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105UMR. Bacteria.
ENOG4111UFK. LUCA.
HOGENOMiHOG000260641.
InParanoidiP45422.
OMAiTISCDAP.

Family and domain databases

InterProiIPR010546. DUF1120.
[Graphical view]
PfamiPF06551. DUF1120. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P45422-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNVKLLIAG SAFFAMSAQA ADRVSIDVKV TLEAAACTPI LSNGGVVNFG
60 70 80 90 100
SHSVNRLSTQ HYTQIGTRNI NMTITCESAT GIAITARDTR MDSMTTGKDS
110 120 130 140 150
GGQSGVKYTL NGGGYISQTT RLFGLGKTKD NKNIGSYAVL IDSNNISASN
160 170 180 190 200
GSQTLAVSIA GADAVITGQK RAWQTLTAYP LAVDQSYYYT FVKPGETTPT
210 220 230
PVTNAIIPLQ VSASIANDLG GSEKIELDGK AVISVVYL
Length:238
Mass (Da):24,900
Last modified:November 1, 1995 - v1
Checksum:i5E7EE24AE6CCACE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58021.1.
U00096 Genomic DNA. Translation: AAC76251.1.
AP009048 Genomic DNA. Translation: BAE77262.1.
PIRiE65113.
RefSeqiNP_417686.1. NC_000913.3.
WP_001067008.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76251; AAC76251; b3219.
BAE77262; BAE77262; BAE77262.
GeneIDi947735.
KEGGiecj:JW3188.
eco:b3219.
PATRICi32121862. VBIEscCol129921_3315.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58021.1.
U00096 Genomic DNA. Translation: AAC76251.1.
AP009048 Genomic DNA. Translation: BAE77262.1.
PIRiE65113.
RefSeqiNP_417686.1. NC_000913.3.
WP_001067008.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP45422.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262057. 14 interactions.
IntActiP45422. 2 interactions.
STRINGi511145.b3219.

Proteomic databases

PaxDbiP45422.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76251; AAC76251; b3219.
BAE77262; BAE77262; BAE77262.
GeneIDi947735.
KEGGiecj:JW3188.
eco:b3219.
PATRICi32121862. VBIEscCol129921_3315.

Organism-specific databases

EchoBASEiEB2663.
EcoGeneiEG12812. yhcF.

Phylogenomic databases

eggNOGiENOG4105UMR. Bacteria.
ENOG4111UFK. LUCA.
HOGENOMiHOG000260641.
InParanoidiP45422.
OMAiTISCDAP.

Enzyme and pathway databases

BioCyciEcoCyc:G7673-MONOMER.
ECOL316407:JW3188-MONOMER.

Miscellaneous databases

PROiP45422.

Family and domain databases

InterProiIPR010546. DUF1120.
[Graphical view]
PfamiPF06551. DUF1120. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYHCF_ECOLI
AccessioniPrimary (citable) accession number: P45422
Secondary accession number(s): Q2M8Z4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: September 7, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.