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Protein

Uncharacterized outer membrane usher protein YhcD

Gene

yhcD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in the export and assembly of a fimbrial subunit across the outer membrane.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processFimbrium biogenesis, Transport

Enzyme and pathway databases

BioCyciEcoCyc:G7670-MONOMER

Protein family/group databases

TCDBi1.B.11.5.1 the outer membrane fimbrial usher porin (fup) family

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized outer membrane usher protein YhcD
Gene namesi
Name:yhcD
Ordered Locus Names:b3216, JW3183
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12810 yhcD

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000000933322 – 793Uncharacterized outer membrane usher protein YhcDAdd BLAST772

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi769 ↔ 792Sequence analysis

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP45420
PRIDEiP45420

Interactioni

Protein-protein interaction databases

BioGridi4261874, 172 interactors
DIPiDIP-12277N
STRINGi316385.ECDH10B_3391

Structurei

3D structure databases

ProteinModelPortaliP45420
SMRiP45420
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the fimbrial export usher family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane beta strand

Phylogenomic databases

eggNOGiENOG4105E6S Bacteria
ENOG410XPN5 LUCA
HOGENOMiHOG000260663
OMAiNASINWA
PhylomeDBiP45420

Family and domain databases

InterProiView protein in InterPro
IPR000015 Fimb_usher
IPR018030 Fimbrial_membr_usher_CS
IPR025949 PapC-like_C
IPR025885 PapC_N
IPR037224 PapC_N_sf
PANTHERiPTHR30451 PTHR30451, 1 hit
PfamiView protein in Pfam
PF13953 PapC_C, 1 hit
PF13954 PapC_N, 1 hit
PF00577 Usher, 1 hit
SUPFAMiSSF141729 SSF141729, 1 hit
PROSITEiView protein in PROSITE
PS01151 FIMBRIAL_USHER, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P45420-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKKTLLAYT IGFAFSPPAN ADGIEIAAVD FDRETLKSLG VDPNISHYFS
60 70 80 90 100
RSARFLPGEY SLIVSVNGEK KGNIATRFDE NGDICLDQAF LQQAGLKIPS
110 120 130 140 150
EEKNGCYDYI LSYPGTTITP LPNQEALDII VSPQAIIPIG LDLTNAATGG
160 170 180 190 200
TAALLNYSLM SSRAEFSNGS SDYSQAALEG GININDWMLR SHQFLTQTNG
210 220 230 240 250
TFSNQNSSTY LQRTFTDLKT LMRAGEVNLN NSVLEGASIY GIEIAPDNAL
260 270 280 290 300
QTSGSGVQVT GIANTSQARV EIRQQGVLIH SILVPAGAFT IPDVPVRNGN
310 320 330 340 350
SDLNVTVVET DGSSHNYIVP STLFNQHVES FQGYRFAIGR VDDDYDESPW
360 370 380 390 400
VISASSGWNL TRWSAMNGGV IVAENYQAAS IRSSLVPLPD LTVSSQISTS
410 420 430 440 450
QDTKDSLQGQ KYRLDANYNL PFSLGLTTSL TRSDRHYREL SEAIDDDYTD
460 470 480 490 500
PTKSTYALGL NWSNSILGGF NISGYKTYSY DGDNDSSNLN INWNKAFKHA
510 520 530 540 550
TVSVNWQHQL SASENNEDDG DLFYVNISIP FGRSNTATLY TRHDDHKTHY
560 570 580 590 600
GTGVMGVVSD EMSYYVNAER DHDERETSLN GSISSNLHYT QVSLAAGASG
610 620 630 640 650
SDSRTYNGTM SGGIAVHDQG VTFSPWTIND TFAIAKMDNN IAGVRITSQA
660 670 680 690 700
GPVWTDFRGN AVIPSIQPWR TSGVEIDTAS LPKNVDIGNG TKMIKQGRGA
710 720 730 740 750
VGKVGFSAIT QRRALLNITL SDGKKLPRGV AIEDSEGNYL TTSVDDGVVF
760 770 780 790
LNNIKPDMVL DIKDEQQSCR IHLTFPEDAP KDVFYETATG ECQ
Length:793
Mass (Da):86,289
Last modified:November 1, 1995 - v1
Checksum:i952CFAB835BB3681
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA Translation: AAA58018.1
U00096 Genomic DNA Translation: AAC76248.1
AP009048 Genomic DNA Translation: BAE77260.1
PIRiB65113
RefSeqiNP_417683.1, NC_000913.3
WP_000914994.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76248; AAC76248; b3216
BAE77260; BAE77260; BAE77260
GeneIDi947738
KEGGiecj:JW3183
eco:b3216
PATRICifig|511145.12.peg.3311

Similar proteinsi

Entry informationi

Entry nameiYHCD_ECOLI
AccessioniPrimary (citable) accession number: P45420
Secondary accession number(s): Q2M8Z6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: April 25, 2018
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

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