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P45215

- Y1459_HAEIN

UniProt

P45215 - Y1459_HAEIN

Protein

Probable RNA polymerase sigma factor HI_1459

Gene

HI_1459

Organism
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 95 (01 Oct 2014)
      Sequence version 1 (01 Nov 1995)
      Previous versions | rss
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    Functioni

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi161 – 18020H-T-H motifBy similarityAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factor

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable RNA polymerase sigma factor HI_1459
    Gene namesi
    Ordered Locus Names:HI_1459
    OrganismiHaemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
    Taxonomic identifieri71421 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeHaemophilus
    ProteomesiUP000000579: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 194194Probable RNA polymerase sigma factor HI_1459PRO_0000094020Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi71421.HI1459.

    Structurei

    3D structure databases

    ProteinModelPortaliP45215.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi45 – 5814Polymerase core bindingAdd
    BLAST

    Sequence similaritiesi

    Belongs to the sigma-70 factor family. ECF subfamily.Curated

    Phylogenomic databases

    eggNOGiCOG1595.
    KOiK03088.
    OMAiHCSIERI.
    OrthoDBiEOG6F299N.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR014289. RNA_pol_sigma-24-rel.
    IPR014284. RNA_pol_sigma-70_dom.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02943. Sig70_famx1. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEiPS01063. SIGMA70_ECF. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P45215-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSFISYISFK GIKMNVISDL ELQQIRTQML TFAQLQVNQA DLAEDLVQEA    50
    FLSAFKNLAN FKRQSAFKTW IFAILKNKII DYLRQKGRFV LESELEDENT 100
    NNSFFDEKGH WKPEYHPSEL QGEEETVYSD EFWLIFETCL NCLPAKQAKI 150
    FMMREFLELS SEEICQETHL TSSNLHTTLY RARLQLQNCL SKKL 194
    Length:194
    Mass (Da):22,843
    Last modified:November 1, 1995 - v1
    Checksum:i9E55F57235B43CE1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L42023 Genomic DNA. Translation: AAC23107.1.
    PIRiG64124.
    RefSeqiNP_439610.2. NC_000907.1.

    Genome annotation databases

    EnsemblBacteriaiAAC23107; AAC23107; HI_1459.
    GeneIDi950350.
    KEGGihin:HI1459.
    PATRICi20191625. VBIHaeInf48452_1522.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L42023 Genomic DNA. Translation: AAC23107.1 .
    PIRi G64124.
    RefSeqi NP_439610.2. NC_000907.1.

    3D structure databases

    ProteinModelPortali P45215.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 71421.HI1459.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC23107 ; AAC23107 ; HI_1459 .
    GeneIDi 950350.
    KEGGi hin:HI1459.
    PATRICi 20191625. VBIHaeInf48452_1522.

    Phylogenomic databases

    eggNOGi COG1595.
    KOi K03088.
    OMAi HCSIERI.
    OrthoDBi EOG6F299N.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR014289. RNA_pol_sigma-24-rel.
    IPR014284. RNA_pol_sigma-70_dom.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02943. Sig70_famx1. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEi PS01063. SIGMA70_ECF. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51907 / DSM 11121 / KW20 / Rd.

    Entry informationi

    Entry nameiY1459_HAEIN
    AccessioniPrimary (citable) accession number: P45215
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: November 1, 1995
    Last modified: October 1, 2014
    This is version 95 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Haemophilus influenzae
      Haemophilus influenzae (strain Rd): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3