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Protein

UPF0001 protein HI_0090

Gene

HI_0090

Organism
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Pyridoxal phosphate

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0001 protein HI_0090
Gene namesi
Ordered Locus Names:HI_0090
OrganismiHaemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Taxonomic identifieri71421 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeHaemophilus
Proteomesi
  • UP000000579 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001631991 – 237UPF0001 protein HI_0090Add BLAST237

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei35N6-(pyridoxal phosphate)lysineBy similarity1

Interactioni

Protein-protein interaction databases

STRINGi71421.HI0090.

Structurei

3D structure databases

ProteinModelPortaliP44506.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0001 family.Curated

Phylogenomic databases

eggNOGiENOG4105DFA. Bacteria.
COG0325. LUCA.
KOiK06997.
OMAiHGSTMVR.
PhylomeDBiP44506.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
IPR011078. UPF0001.
[Graphical view]
PANTHERiPTHR10146. PTHR10146. 1 hit.
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFiPIRSF004848. YBL036c_PLPDEIII. 1 hit.
SUPFAMiSSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00044. TIGR00044. 1 hit.
PROSITEiPS01211. UPF0001. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P44506-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIQHNLNLI QQKIETACKE ENRNQNTVKL LAVSKTKPIS AILSAYQAGQ
60 70 80 90 100
TAFGENYVQE GVEKIQYFES QGINLEWHFI GPLQSNKTRL VAEHFDWMQT
110 120 130 140 150
LDRAKIADRL NEQRPTNKAP LNVLIQINIS DEESKSGIQP EEMLTLAKHI
160 170 180 190 200
ENLPHLCLRG LMAIPAPTDN IAEQENAFRK MLELFEQLKQ VLPNQQIDTL
210 220 230
SMGMTDDMPS AIKCGSTMVR IGTAIFGARN YSTSQNK
Length:237
Mass (Da):26,767
Last modified:October 1, 1996 - v1
Checksum:i804FA860AFCFF7BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L42023 Genomic DNA. Translation: AAC21768.1.
PIRiB64142.
RefSeqiNP_438263.1. NC_000907.1.
WP_005693829.1. NC_000907.1.

Genome annotation databases

EnsemblBacteriaiAAC21768; AAC21768; HI_0090.
GeneIDi950992.
KEGGihin:HI0090.
PATRICi20188643. VBIHaeInf48452_0091.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L42023 Genomic DNA. Translation: AAC21768.1.
PIRiB64142.
RefSeqiNP_438263.1. NC_000907.1.
WP_005693829.1. NC_000907.1.

3D structure databases

ProteinModelPortaliP44506.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi71421.HI0090.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC21768; AAC21768; HI_0090.
GeneIDi950992.
KEGGihin:HI0090.
PATRICi20188643. VBIHaeInf48452_0091.

Phylogenomic databases

eggNOGiENOG4105DFA. Bacteria.
COG0325. LUCA.
KOiK06997.
OMAiHGSTMVR.
PhylomeDBiP44506.

Family and domain databases

Gene3Di3.20.20.10. 1 hit.
InterProiIPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
IPR011078. UPF0001.
[Graphical view]
PANTHERiPTHR10146. PTHR10146. 1 hit.
PfamiPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFiPIRSF004848. YBL036c_PLPDEIII. 1 hit.
SUPFAMiSSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00044. TIGR00044. 1 hit.
PROSITEiPS01211. UPF0001. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY090_HAEIN
AccessioniPrimary (citable) accession number: P44506
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: October 5, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Haemophilus influenzae
    Haemophilus influenzae (strain Rd): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.