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P43607

- RRT5_YEAST

UniProt

P43607 - RRT5_YEAST

Protein

Regulator of rDNA transcription protein 5

Gene

RRT5

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 108 (01 Oct 2014)
      Sequence version 1 (01 Nov 1995)
      Previous versions | rss
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    Functioni

    May be involved in the modulation of rDNA transcription.1 Publication

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. RNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    RNA-binding

    Enzyme and pathway databases

    BioCyciYEAST:G3O-30480-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Regulator of rDNA transcription protein 5
    Gene namesi
    Name:RRT5
    Ordered Locus Names:YFR032C
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome VI

    Organism-specific databases

    CYGDiYFR032c.
    SGDiS000001928. RRT5.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 289289Regulator of rDNA transcription protein 5PRO_0000082029Add
    BLAST

    Expressioni

    Inductioni

    Specifically expressed during sporulation.1 Publication

    Gene expression databases

    GenevestigatoriP43607.

    Interactioni

    Protein-protein interaction databases

    BioGridi31188. 7 interactions.
    DIPiDIP-1808N.
    IntActiP43607. 1 interaction.
    MINTiMINT-393513.
    STRINGi4932.YFR032C.

    Structurei

    3D structure databases

    ProteinModelPortaliP43607.
    SMRiP43607. Positions 14-108, 133-220.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini18 – 10588RRMPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RRT5 family.Curated
    Contains 1 RRM (RNA recognition motif) domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG282384.
    OMAiKPAYKSK.
    OrthoDBiEOG75J0ZD.

    Family and domain databases

    Gene3Di3.30.70.330. 2 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    SMARTiSM00360. RRM. 1 hit.
    [Graphical view]
    PROSITEiPS50102. RRM. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P43607-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTEQVNNDTT SDTTTTITTV YISNLPFTAS ERDLHAFLNN YGASSVLIPT    50
    QTVRRFSKRH NSNPRKPLGI AFAQFANNTL ALKAIQDLNG TVFQNQKLFL 100
    KLHVPYEADS TPDTDVKKPK EKNKVKKTPE TAADTVYCHD LPDDITDSEI 150
    RELFQLYSPQ EIWIYRSKVY RRKCIPFAPH QITAALVTLQ SETPIGDICD 200
    SVAKTATLRG KSIIVKPAYV SKIQEIKQLV KDNLTNARDP PPAALAEPAP 250
    APAPVEPAEQ VQEGQDNAET NDVPPPPASS SDRPTVAAT 289
    Length:289
    Mass (Da):31,865
    Last modified:November 1, 1995 - v1
    Checksum:i24BC54340793F3A1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D50617 Genomic DNA. Translation: BAA09271.1.
    BK006940 Genomic DNA. Translation: DAA12473.1.
    PIRiS56287.
    RefSeqiNP_116689.1. NM_001179997.1.

    Genome annotation databases

    EnsemblFungiiYFR032C; YFR032C; YFR032C.
    GeneIDi850591.
    KEGGisce:YFR032C.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D50617 Genomic DNA. Translation: BAA09271.1 .
    BK006940 Genomic DNA. Translation: DAA12473.1 .
    PIRi S56287.
    RefSeqi NP_116689.1. NM_001179997.1.

    3D structure databases

    ProteinModelPortali P43607.
    SMRi P43607. Positions 14-108, 133-220.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 31188. 7 interactions.
    DIPi DIP-1808N.
    IntActi P43607. 1 interaction.
    MINTi MINT-393513.
    STRINGi 4932.YFR032C.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YFR032C ; YFR032C ; YFR032C .
    GeneIDi 850591.
    KEGGi sce:YFR032C.

    Organism-specific databases

    CYGDi YFR032c.
    SGDi S000001928. RRT5.

    Phylogenomic databases

    eggNOGi NOG282384.
    OMAi KPAYKSK.
    OrthoDBi EOG75J0ZD.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-30480-MONOMER.

    Miscellaneous databases

    NextBioi 966440.

    Gene expression databases

    Genevestigatori P43607.

    Family and domain databases

    Gene3Di 3.30.70.330. 2 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    SMARTi SM00360. RRM. 1 hit.
    [Graphical view ]
    PROSITEi PS50102. RRM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. "Fifteen open reading frames in a 30.8 kb region of the right arm of chromosome VI from Saccharomyces cerevisiae."
      Eki T., Naitou M., Hagiwara H., Abe M., Ozawa M., Sasanuma S., Sasanuma M., Tsuchiya Y., Shibata T., Watanabe K., Ono A., Yamazaki M., Tashiro H., Hanaoka F., Murakami Y.
      Yeast 12:177-190(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 204511 / S288c / AB972.
    4. "Expression profiles of transcripts from 126 open reading frames in the entire chromosome VI of Saccharomyces cerevisiae by systematic northern analyses."
      Naitou M., Hagiwara H., Hanaoka F., Eki T., Murakami Y.
      Yeast 13:1275-1290(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: INDUCTION.
    5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    6. "Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae."
      Hontz R.D., Niederer R.O., Johnson J.M., Smith J.S.
      Genetics 182:105-119(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.

    Entry informationi

    Entry nameiRRT5_YEAST
    AccessioniPrimary (citable) accession number: P43607
    Secondary accession number(s): D6VTR3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: November 1, 1995
    Last modified: October 1, 2014
    This is version 108 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 51100 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    3. Yeast chromosome VI
      Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

    External Data

    Dasty 3