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Protein

Regulator of rDNA transcription protein 5

Gene

RRT5

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May be involved in the modulation of rDNA transcription.1 Publication

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciYEAST:G3O-30480-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Regulator of rDNA transcription protein 5
Gene namesi
Name:RRT5
Ordered Locus Names:YFR032C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome VI

Organism-specific databases

EuPathDBiFungiDB:YFR032C.
SGDiS000001928. RRT5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000820291 – 289Regulator of rDNA transcription protein 5Add BLAST289

Expressioni

Inductioni

Specifically expressed during sporulation.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi31188. 7 interactors.
DIPiDIP-1808N.
IntActiP43607. 1 interactor.
MINTiMINT-393513.

Structurei

3D structure databases

ProteinModelPortaliP43607.
SMRiP43607.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 105RRMPROSITE-ProRule annotationAdd BLAST88

Sequence similaritiesi

Belongs to the RRT5 family.Curated
Contains 1 RRM (RNA recognition motif) domain.PROSITE-ProRule annotation

Phylogenomic databases

InParanoidiP43607.
OMAiFRINILI.
OrthoDBiEOG092C4C6H.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P43607-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEQVNNDTT SDTTTTITTV YISNLPFTAS ERDLHAFLNN YGASSVLIPT
60 70 80 90 100
QTVRRFSKRH NSNPRKPLGI AFAQFANNTL ALKAIQDLNG TVFQNQKLFL
110 120 130 140 150
KLHVPYEADS TPDTDVKKPK EKNKVKKTPE TAADTVYCHD LPDDITDSEI
160 170 180 190 200
RELFQLYSPQ EIWIYRSKVY RRKCIPFAPH QITAALVTLQ SETPIGDICD
210 220 230 240 250
SVAKTATLRG KSIIVKPAYV SKIQEIKQLV KDNLTNARDP PPAALAEPAP
260 270 280
APAPVEPAEQ VQEGQDNAET NDVPPPPASS SDRPTVAAT
Length:289
Mass (Da):31,865
Last modified:November 1, 1995 - v1
Checksum:i24BC54340793F3A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50617 Genomic DNA. Translation: BAA09271.1.
BK006940 Genomic DNA. Translation: DAA12473.1.
PIRiS56287.
RefSeqiNP_116689.1. NM_001179997.1.

Genome annotation databases

EnsemblFungiiBAA09271; BAA09271; BAA09271.
YFR032C; YFR032C; YFR032C.
GeneIDi850591.
KEGGisce:YFR032C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50617 Genomic DNA. Translation: BAA09271.1.
BK006940 Genomic DNA. Translation: DAA12473.1.
PIRiS56287.
RefSeqiNP_116689.1. NM_001179997.1.

3D structure databases

ProteinModelPortaliP43607.
SMRiP43607.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31188. 7 interactors.
DIPiDIP-1808N.
IntActiP43607. 1 interactor.
MINTiMINT-393513.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiBAA09271; BAA09271; BAA09271.
YFR032C; YFR032C; YFR032C.
GeneIDi850591.
KEGGisce:YFR032C.

Organism-specific databases

EuPathDBiFungiDB:YFR032C.
SGDiS000001928. RRT5.

Phylogenomic databases

InParanoidiP43607.
OMAiFRINILI.
OrthoDBiEOG092C4C6H.

Enzyme and pathway databases

BioCyciYEAST:G3O-30480-MONOMER.

Miscellaneous databases

PROiP43607.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRRT5_YEAST
AccessioniPrimary (citable) accession number: P43607
Secondary accession number(s): D6VTR3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: November 2, 2016
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 51100 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome VI
    Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.