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P43607 (RRT5_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 107. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Regulator of rDNA transcription protein 5
Gene names
Name:RRT5
Ordered Locus Names:YFR032C
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length289 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

May be involved in the modulation of rDNA transcription. Ref.6

Induction

Specifically expressed during sporulation. Ref.4

Miscellaneous

Present with 51100 molecules/cell in log phase SD medium.

Sequence similarities

Belongs to the RRT5 family.

Contains 1 RRM (RNA recognition motif) domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 289289Regulator of rDNA transcription protein 5
PRO_0000082029

Regions

Domain18 – 10588RRM

Sequences

Sequence LengthMass (Da)Tools
P43607 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: 24BC54340793F3A1

FASTA28931,865
        10         20         30         40         50         60 
MTEQVNNDTT SDTTTTITTV YISNLPFTAS ERDLHAFLNN YGASSVLIPT QTVRRFSKRH 

        70         80         90        100        110        120 
NSNPRKPLGI AFAQFANNTL ALKAIQDLNG TVFQNQKLFL KLHVPYEADS TPDTDVKKPK 

       130        140        150        160        170        180 
EKNKVKKTPE TAADTVYCHD LPDDITDSEI RELFQLYSPQ EIWIYRSKVY RRKCIPFAPH 

       190        200        210        220        230        240 
QITAALVTLQ SETPIGDICD SVAKTATLRG KSIIVKPAYV SKIQEIKQLV KDNLTNARDP 

       250        260        270        280 
PPAALAEPAP APAPVEPAEQ VQEGQDNAET NDVPPPPASS SDRPTVAAT 

« Hide

References

« Hide 'large scale' references
[1]"Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae."
Murakami Y., Naitou M., Hagiwara H., Shibata T., Ozawa M., Sasanuma S., Sasanuma M., Tsuchiya Y., Soeda E., Yokoyama K., Yamazaki M., Tashiro H., Eki T.
Nat. Genet. 10:261-268(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[2]"The reference genome sequence of Saccharomyces cerevisiae: Then and now."
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.
G3 (Bethesda) 4:389-398(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[3]"Fifteen open reading frames in a 30.8 kb region of the right arm of chromosome VI from Saccharomyces cerevisiae."
Eki T., Naitou M., Hagiwara H., Abe M., Ozawa M., Sasanuma S., Sasanuma M., Tsuchiya Y., Shibata T., Watanabe K., Ono A., Yamazaki M., Tashiro H., Hanaoka F., Murakami Y.
Yeast 12:177-190(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 204511 / S288c / AB972.
[4]"Expression profiles of transcripts from 126 open reading frames in the entire chromosome VI of Saccharomyces cerevisiae by systematic northern analyses."
Naitou M., Hagiwara H., Hanaoka F., Eki T., Murakami Y.
Yeast 13:1275-1290(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: INDUCTION.
[5]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
[6]"Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae."
Hontz R.D., Niederer R.O., Johnson J.M., Smith J.S.
Genetics 182:105-119(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: FUNCTION.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D50617 Genomic DNA. Translation: BAA09271.1.
BK006940 Genomic DNA. Translation: DAA12473.1.
PIRS56287.
RefSeqNP_116689.1. NM_001179997.1.

3D structure databases

ProteinModelPortalP43607.
SMRP43607. Positions 14-108, 133-220.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid31188. 7 interactions.
DIPDIP-1808N.
IntActP43607. 1 interaction.
MINTMINT-393513.
STRING4932.YFR032C.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYFR032C; YFR032C; YFR032C.
GeneID850591.
KEGGsce:YFR032C.

Organism-specific databases

CYGDYFR032c.
SGDS000001928. RRT5.

Phylogenomic databases

eggNOGNOG282384.
OMAKPAYKSK.
OrthoDBEOG75J0ZD.

Enzyme and pathway databases

BioCycYEAST:G3O-30480-MONOMER.

Gene expression databases

GenevestigatorP43607.

Family and domain databases

Gene3D3.30.70.330. 2 hits.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
SMARTSM00360. RRM. 1 hit.
[Graphical view]
PROSITEPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio966440.

Entry information

Entry nameRRT5_YEAST
AccessionPrimary (citable) accession number: P43607
Secondary accession number(s): D6VTR3
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: June 11, 2014
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome VI

Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

SIMILARITY comments

Index of protein domains and families