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P43607

- RRT5_YEAST

UniProt

P43607 - RRT5_YEAST

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Protein
Regulator of rDNA transcription protein 5
Gene
RRT5, YFR032C
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

May be involved in the modulation of rDNA transcription.1 Publication

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. nucleotide binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciYEAST:G3O-30480-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Regulator of rDNA transcription protein 5
Gene namesi
Name:RRT5
Ordered Locus Names:YFR032C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VI

Organism-specific databases

CYGDiYFR032c.
SGDiS000001928. RRT5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 289289Regulator of rDNA transcription protein 5
PRO_0000082029Add
BLAST

Expressioni

Inductioni

Specifically expressed during sporulation.1 Publication

Gene expression databases

GenevestigatoriP43607.

Interactioni

Protein-protein interaction databases

BioGridi31188. 7 interactions.
DIPiDIP-1808N.
IntActiP43607. 1 interaction.
MINTiMINT-393513.
STRINGi4932.YFR032C.

Structurei

3D structure databases

ProteinModelPortaliP43607.
SMRiP43607. Positions 14-108, 133-220.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini18 – 10588RRM
Add
BLAST

Sequence similaritiesi

Belongs to the RRT5 family.

Phylogenomic databases

eggNOGiNOG282384.
OMAiKPAYKSK.
OrthoDBiEOG75J0ZD.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P43607-1 [UniParc]FASTAAdd to Basket

« Hide

MTEQVNNDTT SDTTTTITTV YISNLPFTAS ERDLHAFLNN YGASSVLIPT    50
QTVRRFSKRH NSNPRKPLGI AFAQFANNTL ALKAIQDLNG TVFQNQKLFL 100
KLHVPYEADS TPDTDVKKPK EKNKVKKTPE TAADTVYCHD LPDDITDSEI 150
RELFQLYSPQ EIWIYRSKVY RRKCIPFAPH QITAALVTLQ SETPIGDICD 200
SVAKTATLRG KSIIVKPAYV SKIQEIKQLV KDNLTNARDP PPAALAEPAP 250
APAPVEPAEQ VQEGQDNAET NDVPPPPASS SDRPTVAAT 289
Length:289
Mass (Da):31,865
Last modified:November 1, 1995 - v1
Checksum:i24BC54340793F3A1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D50617 Genomic DNA. Translation: BAA09271.1.
BK006940 Genomic DNA. Translation: DAA12473.1.
PIRiS56287.
RefSeqiNP_116689.1. NM_001179997.1.

Genome annotation databases

EnsemblFungiiYFR032C; YFR032C; YFR032C.
GeneIDi850591.
KEGGisce:YFR032C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D50617 Genomic DNA. Translation: BAA09271.1 .
BK006940 Genomic DNA. Translation: DAA12473.1 .
PIRi S56287.
RefSeqi NP_116689.1. NM_001179997.1.

3D structure databases

ProteinModelPortali P43607.
SMRi P43607. Positions 14-108, 133-220.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 31188. 7 interactions.
DIPi DIP-1808N.
IntActi P43607. 1 interaction.
MINTi MINT-393513.
STRINGi 4932.YFR032C.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YFR032C ; YFR032C ; YFR032C .
GeneIDi 850591.
KEGGi sce:YFR032C.

Organism-specific databases

CYGDi YFR032c.
SGDi S000001928. RRT5.

Phylogenomic databases

eggNOGi NOG282384.
OMAi KPAYKSK.
OrthoDBi EOG75J0ZD.

Enzyme and pathway databases

BioCyci YEAST:G3O-30480-MONOMER.

Miscellaneous databases

NextBioi 966440.

Gene expression databases

Genevestigatori P43607.

Family and domain databases

Gene3Di 3.30.70.330. 2 hits.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view ]
SMARTi SM00360. RRM. 1 hit.
[Graphical view ]
PROSITEi PS50102. RRM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. "Fifteen open reading frames in a 30.8 kb region of the right arm of chromosome VI from Saccharomyces cerevisiae."
    Eki T., Naitou M., Hagiwara H., Abe M., Ozawa M., Sasanuma S., Sasanuma M., Tsuchiya Y., Shibata T., Watanabe K., Ono A., Yamazaki M., Tashiro H., Hanaoka F., Murakami Y.
    Yeast 12:177-190(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204511 / S288c / AB972.
  4. "Expression profiles of transcripts from 126 open reading frames in the entire chromosome VI of Saccharomyces cerevisiae by systematic northern analyses."
    Naitou M., Hagiwara H., Hanaoka F., Eki T., Murakami Y.
    Yeast 13:1275-1290(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION.
  5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  6. "Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae."
    Hontz R.D., Niederer R.O., Johnson J.M., Smith J.S.
    Genetics 182:105-119(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.

Entry informationi

Entry nameiRRT5_YEAST
AccessioniPrimary (citable) accession number: P43607
Secondary accession number(s): D6VTR3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: June 11, 2014
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 51100 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome VI
    Yeast (Saccharomyces cerevisiae) chromosome VI: entries and gene names

External Data

Dasty 3

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