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Protein

Cysteine proteinase RD21a

Gene

RD21A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei161 – 1611By similarity
Active sitei297 – 2971By similarity
Active sitei317 – 3171By similarity

GO - Molecular functioni

  • cysteine-type endopeptidase activity Source: GO_Central
  • cysteine-type peptidase activity Source: TAIR
  • peptidase activity Source: TAIR

GO - Biological processi

  • defense response to fungus Source: TAIR
  • proteolysis Source: TAIR
  • proteolysis involved in cellular protein catabolic process Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Enzyme and pathway databases

BioCyciARA:AT1G47128-MONOMER.

Protein family/group databases

MEROPSiC01.064.

Names & Taxonomyi

Protein namesi
Recommended name:
Cysteine proteinase RD21a (EC:3.4.22.-)
Short name:
RD21
Gene namesi
Name:RD21A
Ordered Locus Names:At1g47128
ORF Names:F2G19.31
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G47128.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: TAIR
  • chloroplast Source: TAIR
  • extracellular space Source: GO_Central
  • lysosome Source: GO_Central
  • plasmodesma Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Propeptidei22 – 136115Activation peptideSequence analysisPRO_0000026457Add
BLAST
Chaini137 – 356220Cysteine proteinase RD21aPRO_0000026458Add
BLAST
Propeptidei357 – 462106Removed in mature formBy similarityPRO_0000046018Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi90 – 901N-linked (GlcNAc...)Sequence analysis
Disulfide bondi158 ↔ 200By similarity
Disulfide bondi192 ↔ 233By similarity
Disulfide bondi291 ↔ 342By similarity
Disulfide bondi375 ↔ 387By similarity
Disulfide bondi381 ↔ 402By similarity
Glycosylationi414 – 4141N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Disulfide bond, Glycoprotein, Zymogen

Proteomic databases

PaxDbiP43297.
PRIDEiP43297.

Expressioni

Inductioni

By high salt conditions.

Gene expression databases

GenevisibleiP43297. AT.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
PDIL1-1Q9XI014EBI-1993101,EBI-449394

Protein-protein interaction databases

BioGridi26347. 9 interactions.
IntActiP43297. 1 interaction.
STRINGi3702.AT1G47128.1.

Structurei

3D structure databases

ProteinModelPortaliP43297.
SMRiP43297. Positions 42-357, 375-422.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase C1 family.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiKOG1543. Eukaryota.
KOG4296. Eukaryota.
COG4870. LUCA.
HOGENOMiHOG000230773.
InParanoidiP43297.
OMAiMSIVVIT.
PhylomeDBiP43297.

Family and domain databases

InterProiIPR000118. Granulin.
IPR025661. Pept_asp_AS.
IPR000169. Pept_cys_AS.
IPR025660. Pept_his_AS.
IPR013128. Peptidase_C1A.
IPR000668. Peptidase_C1A_C.
IPR013201. Prot_inhib_I29.
[Graphical view]
PANTHERiPTHR12411. PTHR12411. 1 hit.
PfamiPF00396. Granulin. 1 hit.
PF08246. Inhibitor_I29. 1 hit.
PF00112. Peptidase_C1. 1 hit.
[Graphical view]
PRINTSiPR00705. PAPAIN.
SMARTiSM00277. GRAN. 1 hit.
SM00848. Inhibitor_I29. 1 hit.
SM00645. Pept_C1. 1 hit.
[Graphical view]
PROSITEiPS00640. THIOL_PROTEASE_ASN. 1 hit.
PS00139. THIOL_PROTEASE_CYS. 1 hit.
PS00639. THIOL_PROTEASE_HIS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P43297-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY
60 70 80 90 100
EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
110 120 130 140 150
ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA
160 170 180 190 200
EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
210 220 230 240 250
NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED
260 270 280 290 300
VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
310 320 330 340 350
AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY
360 370 380 390 400
PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
410 420 430 440 450
GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA
460
TPFWSQGRKN IA
Length:462
Mass (Da):50,966
Last modified:November 1, 1995 - v1
Checksum:i4C59955CCB95AA58
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13043 Genomic DNA. Translation: BAA02374.1.
AC083835 Genomic DNA. Translation: AAG50628.1.
CP002684 Genomic DNA. Translation: AEE32135.1.
AY072130 mRNA. Translation: AAL59952.1.
AY133781 mRNA. Translation: AAM91715.1.
PIRiJN0719.
RefSeqiNP_564497.1. NM_103612.2.
UniGeneiAt.43549.
At.47599.
At.71705.

Genome annotation databases

EnsemblPlantsiAT1G47128.1; AT1G47128.1; AT1G47128.
GeneIDi841122.
GrameneiAT1G47128.1; AT1G47128.1; AT1G47128.
KEGGiath:AT1G47128.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13043 Genomic DNA. Translation: BAA02374.1.
AC083835 Genomic DNA. Translation: AAG50628.1.
CP002684 Genomic DNA. Translation: AEE32135.1.
AY072130 mRNA. Translation: AAL59952.1.
AY133781 mRNA. Translation: AAM91715.1.
PIRiJN0719.
RefSeqiNP_564497.1. NM_103612.2.
UniGeneiAt.43549.
At.47599.
At.71705.

3D structure databases

ProteinModelPortaliP43297.
SMRiP43297. Positions 42-357, 375-422.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi26347. 9 interactions.
IntActiP43297. 1 interaction.
STRINGi3702.AT1G47128.1.

Protein family/group databases

MEROPSiC01.064.

Proteomic databases

PaxDbiP43297.
PRIDEiP43297.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G47128.1; AT1G47128.1; AT1G47128.
GeneIDi841122.
GrameneiAT1G47128.1; AT1G47128.1; AT1G47128.
KEGGiath:AT1G47128.

Organism-specific databases

TAIRiAT1G47128.

Phylogenomic databases

eggNOGiKOG1543. Eukaryota.
KOG4296. Eukaryota.
COG4870. LUCA.
HOGENOMiHOG000230773.
InParanoidiP43297.
OMAiMSIVVIT.
PhylomeDBiP43297.

Enzyme and pathway databases

BioCyciARA:AT1G47128-MONOMER.

Miscellaneous databases

PROiP43297.

Gene expression databases

GenevisibleiP43297. AT.

Family and domain databases

InterProiIPR000118. Granulin.
IPR025661. Pept_asp_AS.
IPR000169. Pept_cys_AS.
IPR025660. Pept_his_AS.
IPR013128. Peptidase_C1A.
IPR000668. Peptidase_C1A_C.
IPR013201. Prot_inhib_I29.
[Graphical view]
PANTHERiPTHR12411. PTHR12411. 1 hit.
PfamiPF00396. Granulin. 1 hit.
PF08246. Inhibitor_I29. 1 hit.
PF00112. Peptidase_C1. 1 hit.
[Graphical view]
PRINTSiPR00705. PAPAIN.
SMARTiSM00277. GRAN. 1 hit.
SM00848. Inhibitor_I29. 1 hit.
SM00645. Pept_C1. 1 hit.
[Graphical view]
PROSITEiPS00640. THIOL_PROTEASE_ASN. 1 hit.
PS00139. THIOL_PROTEASE_CYS. 1 hit.
PS00639. THIOL_PROTEASE_HIS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structure and expression of two genes that encode distinct drought-inducible cysteine proteinases in Arabidopsis thaliana."
    Koizumi M., Yamaguchi-Shinozaki K., Tsuji H., Shinozaki K.
    Gene 129:175-182(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiRD21A_ARATH
AccessioniPrimary (citable) accession number: P43297
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: April 13, 2016
This is version 127 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.