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P43146 (DCC_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 122. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (6) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Netrin receptor DCC
Alternative name(s):
Colorectal cancer suppressor
Immunoglobulin superfamily DCC subclass member 1
Tumor suppressor protein DCC
Gene names
Name:DCC
Synonyms:IGDCC1
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length1447 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Receptor for netrin required for axon guidance. Mediates axon attraction of neuronal growth cones in the developing nervous system upon ligand binding. Its association with UNC5 proteins may trigger signaling for axon repulsion. It also acts as a dependence receptor required for apoptosis induction when not associated with netrin ligand. Implicated as a tumor suppressor gene. Ref.6 Ref.12

Subunit structure

Interacts with the cytoplasmic part of UNC5A, UNC5B, UNC5C and probably UNC5D. Interacts with DSCAM. Interacts with PTK2/FAK1 By similarity. Ref.7

Subcellular location

Membrane; Single-pass type I membrane protein.

Tissue specificity

Found in axons of the central and peripheral nervous system and in differentiated cell types of the intestine. Not expressed in colorectal tumor cells that lost their capacity to differentiate into mucus producing cells. Ref.1

Post-translational modification

Ubiquitinated; mediated by SIAH1 or SIAH2 and leading to its subsequent proteasomal degradation Probable. Ref.7

Involvement in disease

Defects in DCC are the cause of congenital mirror movements (MIMOC) [MIM:157600]. Mirror movements are contralateral involuntary movements that mirror voluntary ones. While mirror movements are occasionally found in young children, persistence beyond the age of 10 is abnormal. Mirror movements occur more commonly in the upper extremities. Ref.10

Miscellaneous

Inactivation of DCC due to allelic deletion and/or point mutations is related to lymphatic and hematogenous metastatic tumor dissemination.

Sequence similarities

Belongs to the immunoglobulin superfamily. DCC family.

Contains 6 fibronectin type-III domains.

Contains 4 Ig-like C2-type (immunoglobulin-like) domains.

Sequence caution

The sequence AAA52175.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence AAA52177.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence AAA52179.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence AAA52180.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 14471422Netrin receptor DCC
PRO_0000014744

Regions

Topological domain26 – 10971072Extracellular Potential
Transmembrane1098 – 112225Helical; Potential
Topological domain1123 – 1447325Cytoplasmic Potential
Domain26 – 135110Ig-like C2-type 1
Domain139 – 22991Ig-like C2-type 2
Domain234 – 32693Ig-like C2-type 3
Domain331 – 41686Ig-like C2-type 4
Domain429 – 52092Fibronectin type-III 1
Domain528 – 61689Fibronectin type-III 2
Domain622 – 71493Fibronectin type-III 3
Domain726 – 81489Fibronectin type-III 4
Domain843 – 93997Fibronectin type-III 5
Domain944 – 104198Fibronectin type-III 6

Amino acid modifications

Modified residue8681Phosphoserine Ref.9
Modified residue10731Phosphoserine Ref.8
Modified residue10741Phosphothreonine Ref.8
Glycosylation941N-linked (GlcNAc...) Potential
Glycosylation2991N-linked (GlcNAc...) Potential
Glycosylation3181N-linked (GlcNAc...) Potential
Glycosylation4781N-linked (GlcNAc...) Potential
Glycosylation6281N-linked (GlcNAc...) Potential
Glycosylation7021N-linked (GlcNAc...) Potential
Disulfide bond61 ↔ 117 By similarity
Disulfide bond161 ↔ 212 By similarity
Disulfide bond261 ↔ 310 By similarity
Disulfide bond352 ↔ 400 By similarity

Natural variations

Natural variant231F → L. Ref.1 Ref.3
Corresponds to variant rs9951523 [ dbSNP | Ensembl ].
VAR_060257
Natural variant1681M → T in a esophageal carcinoma. Ref.12
VAR_003909
Natural variant2011R → G. Ref.12
Corresponds to variant rs2229080 [ dbSNP | Ensembl ].
VAR_003910
Natural variant6791L → R.
Corresponds to variant rs2271042 [ dbSNP | Ensembl ].
VAR_060258
Natural variant7591I → M.
Corresponds to variant rs2278339 [ dbSNP | Ensembl ].
VAR_056043
Natural variant10171M → V.
Corresponds to variant rs984274 [ dbSNP | Ensembl ].
VAR_024495
Natural variant10391F → S in a colorectal cancer sample; somatic mutation. Ref.13
VAR_035511
Natural variant11911H → L.
Corresponds to variant rs2270950 [ dbSNP | Ensembl ].
VAR_060259
Natural variant13751P → H in a colorectal carcinoma. Ref.5
VAR_003911

Experimental info

Sequence conflict9511L → F in CAA53735. Ref.1

Secondary structure

..................................................................................................... 1447
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P43146 [UniParc].

Last modified May 18, 2010. Version 2.
Checksum: BC17EA0E93DE8768

FASTA1,447158,457
        10         20         30         40         50         60 
MENSLRCVWV PKLAFVLFGA SLFSAHLQVT GFQIKAFTAL RFLSEPSDAV TMRGGNVLLD 

        70         80         90        100        110        120 
CSAESDRGVP VIKWKKDGIH LALGMDERKQ QLSNGSLLIQ NILHSRHHKP DEGLYQCEAS 

       130        140        150        160        170        180 
LGDSGSIISR TAKVAVAGPL RFLSQTESVT AFMGDTVLLK CEVIGEPMPT IHWQKNQQDL 

       190        200        210        220        230        240 
TPIPGDSRVV VLPSGALQIS RLQPGDIGIY RCSARNPASS RTGNEAEVRI LSDPGLHRQL 

       250        260        270        280        290        300 
YFLQRPSNVV AIEGKDAVLE CCVSGYPPPS FTWLRGEEVI QLRSKKYSLL GGSNLLISNV 

       310        320        330        340        350        360 
TDDDSGMYTC VVTYKNENIS ASAELTVLVP PWFLNHPSNL YAYESMDIEF ECTVSGKPVP 

       370        380        390        400        410        420 
TVNWMKNGDV VIPSDYFQIV GGSNLRILGV VKSDEGFYQC VAENEAGNAQ TSAQLIVPKP 

       430        440        450        460        470        480 
AIPSSSVLPS APRDVVPVLV SSRFVRLSWR PPAEAKGNIQ TFTVFFSREG DNRERALNTT 

       490        500        510        520        530        540 
QPGSLQLTVG NLKPEAMYTF RVVAYNEWGP GESSQPIKVA TQPELQVPGP VENLQAVSTS 

       550        560        570        580        590        600 
PTSILITWEP PAYANGPVQG YRLFCTEVST GKEQNIEVDG LSYKLEGLKK FTEYSLRFLA 

       610        620        630        640        650        660 
YNRYGPGVST DDITVVTLSD VPSAPPQNVS LEVVNSRSIK VSWLPPPSGT QNGFITGYKI 

       670        680        690        700        710        720 
RHRKTTRRGE METLEPNNLW YLFTGLEKGS QYSFQVSAMT VNGTGPPSNW YTAETPENDL 

       730        740        750        760        770        780 
DESQVPDQPS SLHVRPQTNC IIMSWTPPLN PNIVVRGYII GYGVGSPYAE TVRVDSKQRY 

       790        800        810        820        830        840 
YSIERLESSS HYVISLKAFN NAGEGVPLYE SATTRSITDP TDPVDYYPLL DDFPTSVPDL 

       850        860        870        880        890        900 
STPMLPPVGV QAVALTHDAV RVSWADNSVP KNQKTSEVRL YTVRWRTSFS ASAKYKSEDT 

       910        920        930        940        950        960 
TSLSYTATGL KPNTMYEFSV MVTKNRRSST WSMTAHATTY EAAPTSAPKD LTVITREGKP 

       970        980        990       1000       1010       1020 
RAVIVSWQPP LEANGKITAY ILFYTLDKNI PIDDWIMETI SGDRLTHQIM DLNLDTMYYF 

      1030       1040       1050       1060       1070       1080 
RIQARNSKGV GPLSDPILFR TLKVEHPDKM ANDQGRHGDG GYWPVDTNLI DRSTLNEPPI 

      1090       1100       1110       1120       1130       1140 
GQMHPPHGSV TPQKNSNLLV IIVVTVGVIT VLVVVIVAVI CTRRSSAQQR KKRATHSAGK 

      1150       1160       1170       1180       1190       1200 
RKGSQKDLRP PDLWIHHEEM EMKNIEKPSG TDPAGRDSPI QSCQDLTPVS HSQSETQLGS 

      1210       1220       1230       1240       1250       1260 
KSTSHSGQDT EEAGSSMSTL ERSLAARRAP RAKLMIPMDA QSNNPAVVSA IPVPTLESAQ 

      1270       1280       1290       1300       1310       1320 
YPGILPSPTC GYPHPQFTLR PVPFPTLSVD RGFGAGRSQS VSEGPTTQQP PMLPPSQPEH 

      1330       1340       1350       1360       1370       1380 
SSSEEAPSRT IPTACVRPTH PLRSFANPLL PPPMSAIEPK VPYTPLLSQP GPTLPKTHVK 

      1390       1400       1410       1420       1430       1440 
TASLGLAGKA RSPLLPVSVP TAPEVSEESH KPTEDSANVY EQDDLSEQMA SLEGLMKQLN 


AITGSAF 

« Hide

References

« Hide 'large scale' references
[1]"The DCC gene product in cellular differentiation and colorectal tumorigenesis."
Hedrick L., Cho K.R., Fearon E.R., Wu T.-C., Kinzler K.W., Vogelstein B.
Genes Dev. 8:1174-1183(1994) [PubMed: 7926722] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, VARIANT LEU-23.
[2]"DNA sequence and analysis of human chromosome 18."
Nusbaum C., Zody M.C., Borowsky M.L., Kamal M., Kodira C.D., Taylor T.D., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Abouelleil A., Allen N.R., Anderson S., Bloom T., Bugalter B., Butler J. expand/collapse author list , Cook A., DeCaprio D., Engels R., Garber M., Gnirke A., Hafez N., Hall J.L., Norman C.H., Itoh T., Jaffe D.B., Kuroki Y., Lehoczky J., Lui A., Macdonald P., Mauceli E., Mikkelsen T.S., Naylor J.W., Nicol R., Nguyen C., Noguchi H., O'Leary S.B., Piqani B., Smith C.L., Talamas J.A., Topham K., Totoki Y., Toyoda A., Wain H.M., Young S.K., Zeng Q., Zimmer A.R., Fujiyama A., Hattori M., Birren B.W., Sakaki Y., Lander E.S.
Nature 437:551-555(2005) [PubMed: 16177791] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[3]"Identification of a chromosome 18q gene that is altered in colorectal cancers."
Fearon E.R., Cho K.R., Nigro J.M., Kern S.E., Simons J.W., Ruppert J.M., Hamilton S.R., Preisinger A.C., Thomas G., Kinzler K.W., Vogelstein B.
Science 247:49-56(1990) [PubMed: 2294591] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] OF 1-750, VARIANT LEU-23.
[4]"Scrambled exons."
Nigro J.M., Cho K.R., Fearon E.R., Kern S.E., Ruppert J.M., Oliner J.D., Kinzler K.W., Vogelstein B.
Cell 64:607-613(1991) [PubMed: 1991322] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 107-472.
[5]"The DCC gene: structural analysis and mutations in colorectal carcinomas."
Cho K.R., Oliner J.D., Simons J.W., Hedrick L., Fearon E.R., Preisinger A.C., Hedge P., Silverman G.A., Vogelstein B.
Genomics 19:525-531(1994) [PubMed: 8188295] [Abstract]
Cited for: GENE STRUCTURE, VARIANT HIS-1375.
[6]"Deleted in Colorectal Cancer (DCC) encodes a netrin receptor."
Keino-Masu K., Masu M., Hinck L., Leonardo E.D., Chan S.S.-Y., Culotti J.G., Tessier-Lavigne M.
Cell 87:175-185(1996) [PubMed: 8861902] [Abstract]
Cited for: FUNCTION.
[7]"Mammalian homologs of seven in absentia regulate DCC via the ubiquitin-proteasome pathway."
Hu G., Zhang S., Vidal M., Baer J.L., Xu T., Fearon E.R.
Genes Dev. 11:2701-2714(1997) [PubMed: 9334332] [Abstract]
Cited for: INTERACTION WITH SIAH1 AND SIAH2, DEGRADATION.
[8]"Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column."
Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y.
Anal. Sci. 24:161-166(2008) [PubMed: 18187866] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1073 AND THR-1074, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[9]"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-868, MASS SPECTROMETRY.
Tissue: Embryonic kidney.
[10]"Mutations in DCC cause congenital mirror movements."
Srour M., Riviere J.B., Pham J.M., Dube M.P., Girard S., Morin S., Dion P.A., Asselin G., Rochefort D., Hince P., Diab S., Sharafaddinzadeh N., Chouinard S., Theoret H., Charron F., Rouleau G.A.
Science 328:592-592(2010) [PubMed: 20431009] [Abstract]
Cited for: INVOLVEMENT IN MIMOC.
[11]"Solution structure of the fibronectin type III domains of human netrin receptor DCC."
RIKEN structural genomics initiative (RSGI)
Submitted (MAR-2008) to the PDB data bank
Cited for: STRUCTURE BY NMR OF 419-1047.
[12]"Point mutations and allelic deletion of tumor suppressor gene DCC in human esophageal squamous cell carcinomas and their relation to metastasis."
Miyake S., Nagai K., Yoshino K., Oto M., Endo M., Yuasa Y.
Cancer Res. 54:3007-3010(1994) [PubMed: 8187090] [Abstract]
Cited for: VARIANTS THR-168 AND GLY-201, ROLE IN METASTATIC TUMOR DISSEMINATION.
[13]"The consensus coding sequences of human breast and colorectal cancers."
Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. expand/collapse author list , Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E.
Science 314:268-274(2006) [PubMed: 16959974] [Abstract]
Cited for: VARIANT [LARGE SCALE ANALYSIS] SER-1039.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X76132 mRNA. Translation: CAA53735.1.
AC011155 Genomic DNA. No translation available.
AC016383 Genomic DNA. No translation available.
AC019239 Genomic DNA. No translation available.
AC021486 Genomic DNA. No translation available.
AC027248 Genomic DNA. No translation available.
AC078999 Genomic DNA. No translation available.
AC090660 Genomic DNA. No translation available.
AC100777 Genomic DNA. No translation available.
AC103949 Genomic DNA. No translation available.
AC110591 Genomic DNA. No translation available.
AC116002 Genomic DNA. No translation available.
M32292 mRNA. Translation: AAA35751.1.
M32286 Genomic DNA. Translation: AAA52174.1.
M32288 Genomic DNA. Translation: AAA52175.1. Sequence problems.
M32290 Genomic DNA. Translation: AAA52176.1.
M63696 Genomic DNA. Translation: AAA52177.1. Different initiation.
M63700 Genomic DNA. Translation: AAA52178.1.
M63702 Genomic DNA. Translation: AAA52179.1. Different initiation.
M63718 Genomic DNA. Translation: AAA52180.1. Different initiation.
M63698 Genomic DNA. Translation: AAA52181.1.
IPIIPI00016422.
PIRA54100.
RefSeqNP_005206.2. NM_005215.3.
UniGeneHs.162025.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2ED7NMR-A419-524[»]
2ED8NMR-A528-620[»]
2ED9NMR-A602-718[»]
2EDBNMR-A716-818[»]
2EDDNMR-A833-942[»]
2EDENMR-A944-1044[»]
3AU4X-ray1.90B1390-1447[»]
ProteinModelPortalP43146.
SMRP43146. Positions 7-1047, 1414-1445.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-38423N.
IntActP43146. 26 interactions.
STRINGP43146.

PTM databases

PhosphoSiteP43146.

Polymorphism databases

DMDM296434474.

Proteomic databases

PRIDEP43146.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000442544; ENSP00000389140; ENSG00000187323.
GeneID1630.
KEGGhsa:1630.
UCSCuc002lfe.1. human.

Organism-specific databases

CTD1630.
GeneCardsGC18P049802.
H-InvDBHIX0039754.
HGNCHGNC:2701. DCC.
HPACAB002311.
MIM120470. gene.
157600. phenotype.
neXtProtNX_P43146.
Orphanet238722. Familial congenital mirror movements.
PharmGKBPA27170.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG16468.
HOGENOMHBG358293.
HOVERGENHBG005455.
InParanoidP43146.
OMALVPPWFL.
OrthoDBEOG4WM4SV.
PhylomeDBP43146.

Enzyme and pathway databases

ReactomeREACT_111045. Developmental Biology.
REACT_111155. Cell-Cell communication.
REACT_578. Apoptosis.

Gene expression databases

ArrayExpressP43146.
BgeeP43146.
CleanExHS_DCC.
GenevestigatorP43146.
GermOnlineENSG00000187323. Homo sapiens.

Family and domain databases

InterProIPR003961. Fibronectin_type3.
IPR007110. Ig-like.
IPR013783. Ig-like_fold.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
IPR010560. Neogenin_C.
[Graphical view]
Gene3DG3DSA:2.60.40.10. Ig-like_fold. 10 hits.
KOK06765.
PfamPF00041. fn3. 6 hits.
PF07679. I-set. 3 hits.
PF06583. Neogenin_C. 1 hit.
[Graphical view]
SMARTSM00060. FN3. 6 hits.
SM00409. IG. 1 hit.
SM00408. IGc2. 3 hits.
[Graphical view]
SUPFAMSSF49265. FN_III-like. 6 hits.
PROSITEPS50853. FN3. 6 hits.
PS50835. IG_LIKE. 4 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio6688.
SOURCESearch...

Entry information

Entry nameDCC_HUMAN
AccessionPrimary (citable) accession number: P43146
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: May 18, 2010
Last modified: January 25, 2012
This is version 122 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 18

Human chromosome 18: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families