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Protein

Uncharacterized protein YpjD

Gene

ypjD

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU22500-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YpjD
Gene namesi
Name:ypjD
Synonyms:jojD
Ordered Locus Names:BSU22500
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000497041 – 111Uncharacterized protein YpjDAdd BLAST111

Proteomic databases

PaxDbiP42979.

Interactioni

Subunit structurei

Homodimer, or homotetramer.Curated

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100012366.

Structurei

Secondary structure

1111
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 17Combined sources12
Beta strandi20 – 22Combined sources3
Helixi27 – 48Combined sources22
Beta strandi50 – 52Combined sources3
Helixi62 – 79Combined sources18
Turni80 – 82Combined sources3
Helixi85 – 95Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GTAX-ray2.90A/B/C/D1-111[»]
ProteinModelPortaliP42979.
SMRiP42979.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP42979.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108ZPQ. Bacteria.
COG1694. LUCA.
HOGENOMiHOG000041924.
InParanoidiP42979.
OMAiFNELTNM.
PhylomeDBiP42979.

Family and domain databases

CDDicd11531. NTP-PPase_BsYpjD. 1 hit.
InterProiIPR012359. MazG-related_YpjD.
IPR004518. MazG_cat.
[Graphical view]
PfamiPF03819. MazG. 1 hit.
[Graphical view]
PIRSFiPIRSF029904. UCP029904_pph. 1 hit.

Sequencei

Sequence statusi: Complete.

P42979-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDKTMKDIQ AEVDRYIGQF KEGYFSPLAM MARLTEELGE LAREVNHRYG
60 70 80 90 100
EKPKKATEDD KSMEEEIGDV LFVLVCLANS LDISLEEAHD RVMHKFNTRD
110
KDRWTRKEEG K
Length:111
Mass (Da):12,971
Last modified:November 1, 1995 - v1
Checksum:i95C48372A4A6451B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L38424 Genomic DNA. Translation: AAA92873.1.
L47709 Genomic DNA. Translation: AAB38441.1.
AL009126 Genomic DNA. Translation: CAB14166.1.
PIRiD69937.
RefSeqiNP_390131.1. NC_000964.3.
WP_004398996.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB14166; CAB14166; BSU22500.
GeneIDi939022.
KEGGibsu:BSU22500.
PATRICi18976309. VBIBacSub10457_2345.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L38424 Genomic DNA. Translation: AAA92873.1.
L47709 Genomic DNA. Translation: AAB38441.1.
AL009126 Genomic DNA. Translation: CAB14166.1.
PIRiD69937.
RefSeqiNP_390131.1. NC_000964.3.
WP_004398996.1. NZ_JNCM01000036.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GTAX-ray2.90A/B/C/D1-111[»]
ProteinModelPortaliP42979.
SMRiP42979.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100012366.

Proteomic databases

PaxDbiP42979.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB14166; CAB14166; BSU22500.
GeneIDi939022.
KEGGibsu:BSU22500.
PATRICi18976309. VBIBacSub10457_2345.

Phylogenomic databases

eggNOGiENOG4108ZPQ. Bacteria.
COG1694. LUCA.
HOGENOMiHOG000041924.
InParanoidiP42979.
OMAiFNELTNM.
PhylomeDBiP42979.

Enzyme and pathway databases

BioCyciBSUB:BSU22500-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP42979.

Family and domain databases

CDDicd11531. NTP-PPase_BsYpjD. 1 hit.
InterProiIPR012359. MazG-related_YpjD.
IPR004518. MazG_cat.
[Graphical view]
PfamiPF03819. MazG. 1 hit.
[Graphical view]
PIRSFiPIRSF029904. UCP029904_pph. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYPJD_BACSU
AccessioniPrimary (citable) accession number: P42979
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: November 2, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.