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Protein

Uncharacterized UPF0442 protein YJL107C

Gene

YJL107C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciYEAST:G3O-31561-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized UPF0442 protein YJL107C
Gene namesi
Ordered Locus Names:YJL107C
ORF Names:J0813
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome X

Organism-specific databases

CYGDiYJL107c.
SGDiS000003643. YJL107C.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 387387Uncharacterized UPF0442 protein YJL107CPRO_0000203046Add
BLAST

Proteomic databases

PaxDbiP42947.

Expressioni

Gene expression databases

GenevestigatoriP42947.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
TIF1P100811EBI-26023,EBI-9017

Protein-protein interaction databases

BioGridi33649. 13 interactions.
DIPiDIP-5095N.
MINTiMINT-573900.
STRINGi4932.YJL107C.

Structurei

3D structure databases

ProteinModelPortaliP42947.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0442 family.Curated

Phylogenomic databases

eggNOGiCOG2966.
OrthoDBiEOG7CCC0Q.

Family and domain databases

InterProiIPR010619. DUF1212.
[Graphical view]
PfamiPF06738. DUF1212. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42947-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDGRNEKPTT PVSDFRVGSS EQSQAGVNLE DSSDHRTSNS AESKKGNLSG
60 70 80 90 100
KSISDLGISN NDNKNVRFTA DTDALENDLS SRSTETSDNS KGTDGQDEED
110 120 130 140 150
RPARHKRKPK VSFTHLRNNG KDGDDETFIK KIINNLTGNQ GGLVPGLAPI
160 170 180 190 200
PSENENGKND IEKNNRNEEI PLSDLADASK IVDVHEGDDK EKLEALKLEG
210 220 230 240 250
DVNCTSDGET LGSSSKNSFL APAVDHFDDY AENNSSDDNE GFIETSTYVP
260 270 280 290 300
PPSQVKSGVL GSLLKLYQNE DQNSSSIFSD SQAVTTDDEG ISSTAGNKDV
310 320 330 340 350
PVAKRSRLQN LKGKAKKGRM PRLKKRLKTE AKITVHIADI LQRHRFILRM
360 370 380
CRALMMYGAP THRLEEYMVM TSRVLEIDGQ FCIFQVV
Length:387
Mass (Da):42,508
Last modified:November 1, 1995 - v1
Checksum:iD7659D1955F5677F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X85021 Genomic DNA. Translation: CAA59387.1.
Z49383 Genomic DNA. Translation: CAA89403.1.
AY557885 Genomic DNA. Translation: AAS56211.1.
AY227895 Genomic DNA. No translation available.
BK006943 Genomic DNA. Translation: DAA08693.1.
PIRiS53380.
RefSeqiNP_012428.1. NM_001181540.1.

Genome annotation databases

EnsemblFungiiYJL107C; YJL107C; YJL107C.
GeneIDi853337.
KEGGisce:YJL107C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X85021 Genomic DNA. Translation: CAA59387.1.
Z49383 Genomic DNA. Translation: CAA89403.1.
AY557885 Genomic DNA. Translation: AAS56211.1.
AY227895 Genomic DNA. No translation available.
BK006943 Genomic DNA. Translation: DAA08693.1.
PIRiS53380.
RefSeqiNP_012428.1. NM_001181540.1.

3D structure databases

ProteinModelPortaliP42947.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi33649. 13 interactions.
DIPiDIP-5095N.
MINTiMINT-573900.
STRINGi4932.YJL107C.

Proteomic databases

PaxDbiP42947.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYJL107C; YJL107C; YJL107C.
GeneIDi853337.
KEGGisce:YJL107C.

Organism-specific databases

CYGDiYJL107c.
SGDiS000003643. YJL107C.

Phylogenomic databases

eggNOGiCOG2966.
OrthoDBiEOG7CCC0Q.

Enzyme and pathway databases

BioCyciYEAST:G3O-31561-MONOMER.

Miscellaneous databases

NextBioi973715.

Gene expression databases

GenevestigatoriP42947.

Family and domain databases

InterProiIPR010619. DUF1212.
[Graphical view]
PfamiPF06738. DUF1212. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A 37.5 kb region of yeast chromosome X includes the SME1, MEF2, GSH1 and CSD3 genes, a TCP-1-related gene, an open reading frame similar to the DAL80 gene, and a tRNA(Arg)."
    Rasmussen S.W.
    Yeast 11:873-883(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 96604 / S288c / FY1679.
  2. "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
    Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K.
    , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
    EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  5. "Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii."
    Brachat S., Dietrich F.S., Voegeli S., Zhang Z., Stuart L., Lerch A., Gates K., Gaffney T.D., Philippsen P.
    Genome Biol. 4:R45.1-R45.13(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 360-387, CONFIRMATION OF FRAMESHIFT.
    Strain: ATCC 204511 / S288c / AB972.
  6. "Organization of specific genomic regions of Zygosaccharomyces rouxii and Pichia sorbitophila: comparison with Saccharomyces cerevisiae."
    Sychrova H., Braun V., Potier S., Souciet J.L.
    Yeast 16:1377-1385(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: CONFIRMATION OF FRAMESHIFT.
    Strain: ATCC 204508 / S288c and ATCC 28383 / FL100 / VTT C-80102.
  7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYJK7_YEAST
AccessioniPrimary (citable) accession number: P42947
Secondary accession number(s): D6VW77
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: January 7, 2015
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 1480 molecules/cell in log phase SD medium.1 Publication

Caution

This is a truncated version of an UPF0442 family protein. Strain S288c has a frameshift in position 382, which disrupts the gene coding for this protein and produces two ORFs YJL107C and YJL108C. A contiguous sequence for a S.cerevisiae UPF0442 family protein can be found in strain YJM789 (AC A6ZQL9).Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome X
    Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.