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P42947

- YJK7_YEAST

UniProt

P42947 - YJK7_YEAST

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Protein
Uncharacterized UPF0442 protein YJL107C
Gene
YJL107C, J0813
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciYEAST:G3O-31561-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized UPF0442 protein YJL107C
Gene namesi
Ordered Locus Names:YJL107C
ORF Names:J0813
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome X

Organism-specific databases

CYGDiYJL107c.
SGDiS000003643. YJL107C.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 387387Uncharacterized UPF0442 protein YJL107C
PRO_0000203046Add
BLAST

Proteomic databases

PaxDbiP42947.

Expressioni

Gene expression databases

GenevestigatoriP42947.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
TIF1P100811EBI-26023,EBI-9017

Protein-protein interaction databases

BioGridi33649. 12 interactions.
DIPiDIP-5095N.
MINTiMINT-573900.
STRINGi4932.YJL107C.

Structurei

3D structure databases

ProteinModelPortaliP42947.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0442 family.

Phylogenomic databases

eggNOGiCOG2966.
OMAiIPSENEN.
OrthoDBiEOG7CCC0Q.

Family and domain databases

InterProiIPR010619. DUF1212.
[Graphical view]
PfamiPF06738. DUF1212. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42947-1 [UniParc]FASTAAdd to Basket

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MDGRNEKPTT PVSDFRVGSS EQSQAGVNLE DSSDHRTSNS AESKKGNLSG    50
KSISDLGISN NDNKNVRFTA DTDALENDLS SRSTETSDNS KGTDGQDEED 100
RPARHKRKPK VSFTHLRNNG KDGDDETFIK KIINNLTGNQ GGLVPGLAPI 150
PSENENGKND IEKNNRNEEI PLSDLADASK IVDVHEGDDK EKLEALKLEG 200
DVNCTSDGET LGSSSKNSFL APAVDHFDDY AENNSSDDNE GFIETSTYVP 250
PPSQVKSGVL GSLLKLYQNE DQNSSSIFSD SQAVTTDDEG ISSTAGNKDV 300
PVAKRSRLQN LKGKAKKGRM PRLKKRLKTE AKITVHIADI LQRHRFILRM 350
CRALMMYGAP THRLEEYMVM TSRVLEIDGQ FCIFQVV 387
Length:387
Mass (Da):42,508
Last modified:November 1, 1995 - v1
Checksum:iD7659D1955F5677F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X85021 Genomic DNA. Translation: CAA59387.1.
Z49383 Genomic DNA. Translation: CAA89403.1.
AY557885 Genomic DNA. Translation: AAS56211.1.
AY227895 Genomic DNA. No translation available.
BK006943 Genomic DNA. Translation: DAA08693.1.
PIRiS53380.
RefSeqiNP_012428.1. NM_001181540.1.

Genome annotation databases

EnsemblFungiiYJL107C; YJL107C; YJL107C.
GeneIDi853337.
KEGGisce:YJL107C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X85021 Genomic DNA. Translation: CAA59387.1 .
Z49383 Genomic DNA. Translation: CAA89403.1 .
AY557885 Genomic DNA. Translation: AAS56211.1 .
AY227895 Genomic DNA. No translation available.
BK006943 Genomic DNA. Translation: DAA08693.1 .
PIRi S53380.
RefSeqi NP_012428.1. NM_001181540.1.

3D structure databases

ProteinModelPortali P42947.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 33649. 12 interactions.
DIPi DIP-5095N.
MINTi MINT-573900.
STRINGi 4932.YJL107C.

Proteomic databases

PaxDbi P42947.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YJL107C ; YJL107C ; YJL107C .
GeneIDi 853337.
KEGGi sce:YJL107C.

Organism-specific databases

CYGDi YJL107c.
SGDi S000003643. YJL107C.

Phylogenomic databases

eggNOGi COG2966.
OMAi IPSENEN.
OrthoDBi EOG7CCC0Q.

Enzyme and pathway databases

BioCyci YEAST:G3O-31561-MONOMER.

Miscellaneous databases

NextBioi 973715.

Gene expression databases

Genevestigatori P42947.

Family and domain databases

InterProi IPR010619. DUF1212.
[Graphical view ]
Pfami PF06738. DUF1212. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A 37.5 kb region of yeast chromosome X includes the SME1, MEF2, GSH1 and CSD3 genes, a TCP-1-related gene, an open reading frame similar to the DAL80 gene, and a tRNA(Arg)."
    Rasmussen S.W.
    Yeast 11:873-883(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 96604 / S288c / FY1679.
  2. "Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
    Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K.
    , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
    EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  5. "Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii."
    Brachat S., Dietrich F.S., Voegeli S., Zhang Z., Stuart L., Lerch A., Gates K., Gaffney T.D., Philippsen P.
    Genome Biol. 4:R45.1-R45.13(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 360-387, CONFIRMATION OF FRAMESHIFT.
    Strain: ATCC 204511 / S288c / AB972.
  6. "Organization of specific genomic regions of Zygosaccharomyces rouxii and Pichia sorbitophila: comparison with Saccharomyces cerevisiae."
    Sychrova H., Braun V., Potier S., Souciet J.L.
    Yeast 16:1377-1385(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: CONFIRMATION OF FRAMESHIFT.
    Strain: ATCC 204508 / S288c and ATCC 28383 / FL100 / VTT C-80102.
  7. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYJK7_YEAST
AccessioniPrimary (citable) accession number: P42947
Secondary accession number(s): D6VW77
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: June 11, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 1480 molecules/cell in log phase SD medium.

Caution

This is a truncated version of an UPF0442 family protein. Strain S288c has a frameshift in position 382, which disrupts the gene coding for this protein and produces two ORFs YJL107C and YJL108C. A contiguous sequence for a S.cerevisiae UPF0442 family protein can be found in strain YJM789 (AC A6ZQL9).

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome X
    Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

External Data

Dasty 3