P42947 (YJK7_YEAST) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized UPF0442 protein YJL107C

Gene names

Ordered Locus Names:	YJL107C
ORF Names:	J0813

Organism

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]

Taxonomic identifier

559292 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › saccharomyceta › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces › Saccharomyces cerevisiae

Protein attributes

Sequence length	387 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Miscellaneous	Present with 1480 molecules/cell in log phase SD medium.
Sequence similarities	Belongs to the UPF0442 family.
Caution	This is a truncated version of an UPF0442 family protein. Strain S288c has a frameshift in position 382, which disrupts the gene coding for this protein and produces two ORFs YJL107C and YJL108C. A contiguous sequence for a S.cerevisiae UPF0442 family protein can be found in strain YJM789 (AC A6ZQL9).

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Binary interactions

With	Entry	#Exp.	IntAct	Notes
TIF1	P10081	1	EBI-26023,EBI-9017

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 387	387	Uncharacterized UPF0442 protein YJL107C		PRO_0000203046

Sequences

	Sequence		Length	Mass (Da)
	P42947 [UniParc]. Last modified November 1, 1995. Version 1. Checksum: D7659D1955F5677F	FASTA	387	42,508
	10 20 30 40 50 60 MDGRNEKPTT PVSDFRVGSS EQSQAGVNLE DSSDHRTSNS AESKKGNLSG KSISDLGISN 70 80 90 100 110 120 NDNKNVRFTA DTDALENDLS SRSTETSDNS KGTDGQDEED RPARHKRKPK VSFTHLRNNG 130 140 150 160 170 180 KDGDDETFIK KIINNLTGNQ GGLVPGLAPI PSENENGKND IEKNNRNEEI PLSDLADASK 190 200 210 220 230 240 IVDVHEGDDK EKLEALKLEG DVNCTSDGET LGSSSKNSFL APAVDHFDDY AENNSSDDNE 250 260 270 280 290 300 GFIETSTYVP PPSQVKSGVL GSLLKLYQNE DQNSSSIFSD SQAVTTDDEG ISSTAGNKDV 310 320 330 340 350 360 PVAKRSRLQN LKGKAKKGRM PRLKKRLKTE AKITVHIADI LQRHRFILRM CRALMMYGAP 370 380 THRLEEYMVM TSRVLEIDGQ FCIFQVV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"A 37.5 kb region of yeast chromosome X includes the SME1, MEF2, GSH1 and CSD3 genes, a TCP-1-related gene, an open reading frame similar to the DAL80 gene, and a tRNA(Arg)." Rasmussen S.W. Yeast 11:873-883(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 96604 / S288c / FY1679.
[2]	"Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X." Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K. , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L. EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 96604 / S288c / FY1679.
[3]	Saccharomyces Genome Database Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: ATCC 204508 / S288c.
[4]	"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae." Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J. , Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J. Genome Res. 17:536-543(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 204508 / S288c.
[5]	"Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii." Brachat S., Dietrich F.S., Voegeli S., Zhang Z., Stuart L., Lerch A., Gates K., Gaffney T.D., Philippsen P. Genome Biol. 4:R45.1-R45.13(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 360-387, CONFIRMATION OF FRAMESHIFT. Strain: ATCC 204511 / S288c / AB972.
[6]	"Organization of specific genomic regions of Zygosaccharomyces rouxii and Pichia sorbitophila: comparison with Saccharomyces cerevisiae." Sychrova H., Braun V., Potier S., Souciet J.L. Yeast 16:1377-1385(2000) [PubMed] [Europe PMC] [Abstract] Cited for: CONFIRMATION OF FRAMESHIFT. Strain: ATCC 204508 / S288c and ATCC 28383 / FL100 / VTT C-80102.
[7]	"Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X85021 Genomic DNA. Translation: CAA59387.1. Z49383 Genomic DNA. Translation: CAA89403.1. AY557885 Genomic DNA. Translation: AAS56211.1. AY227895 Genomic DNA. No translation available. BK006943 Genomic DNA. Translation: DAA08693.1.
PIR	S53380.
RefSeq	NP_012428.1. NM_001181540.1.
3D structure databases
ProteinModelPortal	P42947.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-5095N.
IntAct	P42947. 1 interaction.
MINT	MINT-573900.
STRING	4932.YJL107C.
Proteomic databases
PaxDb	P42947.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblFungi	YJL107C; YJL107C; YJL107C.
GeneID	853337.
KEGG	sce:YJL107C.
Organism-specific databases
CYGD	YJL107c.
SGD	S000003643. YJL107C.
Phylogenomic databases
eggNOG	COG2966.
OrthoDB	EOG4T4H57.
Gene expression databases
Genevestigator	P42947.
GermOnline	YJL107C. Saccharomyces cerevisiae.
Family and domain databases
ProtoNet	Search...
Other
NextBio	973715.

Entry information

Entry name

YJK7_YEAST

Accession

Primary (citable) accession number: P42947
Secondary accession number(s): D6VW77

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1995
Last sequence update:	November 1, 1995
Last modified:	April 3, 2013
This is version 76 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Fungal Protein Annotation Program