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P42947 (YJK7_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized UPF0442 protein YJL107C
Gene names
Ordered Locus Names:YJL107C
ORF Names:J0813
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length387 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Miscellaneous

Present with 1480 molecules/cell in log phase SD medium.

Sequence similarities

Belongs to the UPF0442 family.

Caution

This is a truncated version of an UPF0442 family protein. Strain S288c has a frameshift in position 382, which disrupts the gene coding for this protein and produces two ORFs YJL107C and YJL108C. A contiguous sequence for a S.cerevisiae UPF0442 family protein can be found in strain YJM789 (AC A6ZQL9).

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Binary interactions

With

Entry

#Exp.

IntAct

Notes

TIF1P100811EBI-26023,EBI-9017

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 387387Uncharacterized UPF0442 protein YJL107C
PRO_0000203046

Sequences

Sequence LengthMass (Da)Tools
P42947 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: D7659D1955F5677F

FASTA38742,508
        10         20         30         40         50         60 
MDGRNEKPTT PVSDFRVGSS EQSQAGVNLE DSSDHRTSNS AESKKGNLSG KSISDLGISN 

        70         80         90        100        110        120 
NDNKNVRFTA DTDALENDLS SRSTETSDNS KGTDGQDEED RPARHKRKPK VSFTHLRNNG 

       130        140        150        160        170        180 
KDGDDETFIK KIINNLTGNQ GGLVPGLAPI PSENENGKND IEKNNRNEEI PLSDLADASK 

       190        200        210        220        230        240 
IVDVHEGDDK EKLEALKLEG DVNCTSDGET LGSSSKNSFL APAVDHFDDY AENNSSDDNE 

       250        260        270        280        290        300 
GFIETSTYVP PPSQVKSGVL GSLLKLYQNE DQNSSSIFSD SQAVTTDDEG ISSTAGNKDV 

       310        320        330        340        350        360 
PVAKRSRLQN LKGKAKKGRM PRLKKRLKTE AKITVHIADI LQRHRFILRM CRALMMYGAP 

       370        380 
THRLEEYMVM TSRVLEIDGQ FCIFQVV 

« Hide

References

« Hide 'large scale' references
[1]"A 37.5 kb region of yeast chromosome X includes the SME1, MEF2, GSH1 and CSD3 genes, a TCP-1-related gene, an open reading frame similar to the DAL80 gene, and a tRNA(Arg)."
Rasmussen S.W.
Yeast 11:873-883(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 96604 / S288c / FY1679.
[2]"Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X."
Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K. expand/collapse author list , Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.
EMBO J. 15:2031-2049(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[3]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[4]"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae."
Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J. expand/collapse author list , Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J.
Genome Res. 17:536-543(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[5]"Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii."
Brachat S., Dietrich F.S., Voegeli S., Zhang Z., Stuart L., Lerch A., Gates K., Gaffney T.D., Philippsen P.
Genome Biol. 4:R45.1-R45.13(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 360-387, CONFIRMATION OF FRAMESHIFT.
Strain: ATCC 204511 / S288c / AB972.
[6]"Organization of specific genomic regions of Zygosaccharomyces rouxii and Pichia sorbitophila: comparison with Saccharomyces cerevisiae."
Sychrova H., Braun V., Potier S., Souciet J.L.
Yeast 16:1377-1385(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: CONFIRMATION OF FRAMESHIFT.
Strain: ATCC 204508 / S288c and ATCC 28383 / FL100 / VTT C-80102.
[7]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X85021 Genomic DNA. Translation: CAA59387.1.
Z49383 Genomic DNA. Translation: CAA89403.1.
AY557885 Genomic DNA. Translation: AAS56211.1.
AY227895 Genomic DNA. No translation available.
BK006943 Genomic DNA. Translation: DAA08693.1.
PIRS53380.
RefSeqNP_012428.1. NM_001181540.1.

3D structure databases

ProteinModelPortalP42947.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid33649. 12 interactions.
DIPDIP-5095N.
MINTMINT-573900.
STRING4932.YJL107C.

Proteomic databases

PaxDbP42947.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYJL107C; YJL107C; YJL107C.
GeneID853337.
KEGGsce:YJL107C.

Organism-specific databases

CYGDYJL107c.
SGDS000003643. YJL107C.

Phylogenomic databases

eggNOGCOG2966.
OrthoDBEOG7CCC0Q.

Enzyme and pathway databases

BioCycYEAST:G3O-31561-MONOMER.

Gene expression databases

GenevestigatorP42947.

Family and domain databases

InterProIPR010619. DUF1212.
[Graphical view]
PfamPF06738. DUF1212. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio973715.

Entry information

Entry nameYJK7_YEAST
AccessionPrimary (citable) accession number: P42947
Secondary accession number(s): D6VW77
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: February 19, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome X

Yeast (Saccharomyces cerevisiae) chromosome X: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families