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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU01180-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:BSU01180
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001293981 – 9550S ribosomal protein L23Add BLAST95

Proteomic databases

PaxDbiP42924.
PRIDEiP42924.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Protein-protein interaction databases

IntActiP42924. 2 interactors.
STRINGi224308.Bsubs1_010100000610.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J3Velectron microscopy13.30T1-95[»]
3J3Welectron microscopy10.70T1-95[»]
3J9Welectron microscopy3.90BW1-95[»]
ProteinModelPortaliP42924.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41080UE. Bacteria.
COG0089. LUCA.
HOGENOMiHOG000231366.
InParanoidiP42924.
KOiK02892.
OMAiRVNTINR.
PhylomeDBiP42924.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42924-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDPRDVLKR PVITERSADL MTEKKYTFEV DVRANKTEVK DAVESIFGVK
60 70 80 90
VDKVNIMNYK GKSKRVGRYT GMTSRRRKAI VKLTADSKEI EIFEA
Length:95
Mass (Da):10,956
Last modified:June 16, 2009 - v2
Checksum:i54272FBD14393AD6
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti24K → E in AAC45958 (PubMed:9371452).Curated1
Sequence conflicti24K → E in BAA08833 (PubMed:8969501).Curated1
Sequence conflicti39V → A in AAC45958 (PubMed:9371452).Curated1
Sequence conflicti39V → A in BAA08833 (PubMed:8969501).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43929 Genomic DNA. Translation: AAC45958.1.
D50302 Genomic DNA. Translation: BAA08833.1.
AL009126 Genomic DNA. Translation: CAB11894.2.
PIRiA69697.
RefSeqiNP_387999.2. NC_000964.3.
WP_003156467.1. NZ_JNCM01000029.1.

Genome annotation databases

EnsemblBacteriaiCAB11894; CAB11894; BSU01180.
GeneIDi936820.
9779966.
KEGGibsu:BSU01180.
PATRICi18971745. VBIBacSub10457_0121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43929 Genomic DNA. Translation: AAC45958.1.
D50302 Genomic DNA. Translation: BAA08833.1.
AL009126 Genomic DNA. Translation: CAB11894.2.
PIRiA69697.
RefSeqiNP_387999.2. NC_000964.3.
WP_003156467.1. NZ_JNCM01000029.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J3Velectron microscopy13.30T1-95[»]
3J3Welectron microscopy10.70T1-95[»]
3J9Welectron microscopy3.90BW1-95[»]
ProteinModelPortaliP42924.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP42924. 2 interactors.
STRINGi224308.Bsubs1_010100000610.

Proteomic databases

PaxDbiP42924.
PRIDEiP42924.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB11894; CAB11894; BSU01180.
GeneIDi936820.
9779966.
KEGGibsu:BSU01180.
PATRICi18971745. VBIBacSub10457_0121.

Phylogenomic databases

eggNOGiENOG41080UE. Bacteria.
COG0089. LUCA.
HOGENOMiHOG000231366.
InParanoidiP42924.
KOiK02892.
OMAiRVNTINR.
PhylomeDBiP42924.

Enzyme and pathway databases

BioCyciBSUB:BSU01180-MONOMER.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL23_BACSU
AccessioniPrimary (citable) accession number: P42924
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: June 16, 2009
Last modified: October 5, 2016
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.