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Protein

40S ribosomal protein S15a-1

Gene

RPS15AA

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S15a-1
Gene namesi
Name:RPS15AA
Ordered Locus Names:At1g07770
ORF Names:F24B9.12
AND
Name:RPS15AF
Ordered Locus Names:At5g59850
ORF Names:MMN10.16, MMN10.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 1, Chromosome 5

Organism-specific databases

TAIRiAT1G07770.
AT5G59850.

Subcellular locationi

GO - Cellular componenti

  • cell wall Source: TAIR
  • cytosol Source: TAIR
  • cytosolic ribosome Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • membrane Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
  • vacuolar membrane Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13013040S ribosomal protein S15a-1PRO_0000126612Add
BLAST

Proteomic databases

PaxDbiP42798.
PRIDEiP42798.

Expressioni

Gene expression databases

ExpressionAtlasiP42798. baseline and differential.
GenevisibleiP42798. AT.

Interactioni

Protein-protein interaction databases

BioGridi21351. 1 interaction.
22532. 2 interactions.
IntActiP42798. 1 interaction.
STRINGi3702.AT5G59850.1.

Structurei

3D structure databases

ProteinModelPortaliP42798.
SMRiP42798. Positions 3-130.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8P family.Curated

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
HOGENOMiHOG000204097.
InParanoidiP42798.
KOiK02957.
OMAiWEKQFLP.
OrthoDBiEOG09360S3L.
PhylomeDBiP42798.

Family and domain databases

HAMAPiMF_01302_A. Ribosomal_S8_A. 1 hit.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42798-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRISVLNDA LKSMYNAEKR GKRQVMIRPS SKVIIKFLIV MQKHGYIGEF
60 70 80 90 100
EYVDDHRSGK IVVELNGRLN KCGVISPRFD VGVKEIEGWT ARLLPSRQFG
110 120 130
YIVLTTSAGI MDHEEARRKN VGGKVLGFFY
Length:130
Mass (Da):14,804
Last modified:January 23, 2007 - v2
Checksum:i1CCA1A23525507C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L27461 Genomic DNA. Translation: AAA61608.1.
AF001412 mRNA. Translation: AAB58750.1.
AC007583 Genomic DNA. Translation: AAF75076.1.
AB015475 Genomic DNA. Translation: BAB08353.1.
CP002684 Genomic DNA. Translation: AEE28177.1.
CP002684 Genomic DNA. Translation: AEE28178.1.
CP002688 Genomic DNA. Translation: AED97242.1.
AF332447 mRNA. Translation: AAG48810.1.
AF360284 mRNA. Translation: AAK25994.1.
AF386922 mRNA. Translation: AAK62367.1.
AY042830 mRNA. Translation: AAK68770.1.
AY051040 mRNA. Translation: AAK93717.1.
AY081472 mRNA. Translation: AAM10034.1.
AY081689 mRNA. Translation: AAM10251.1.
AY035157 mRNA. Translation: AAK59661.1.
AY063028 mRNA. Translation: AAL34202.1.
BT000671 mRNA. Translation: AAN31818.1.
AY088335 mRNA. Translation: AAM65874.1.
AY087576 mRNA. Translation: AAM65118.1.
PIRiB86213.
RefSeqiNP_172256.1. NM_100651.4.
NP_200793.1. NM_125378.3.
NP_973783.1. NM_202054.3.
UniGeneiAt.21259.
At.23585.
At.57582.
At.6667.

Genome annotation databases

EnsemblPlantsiAT1G07770.1; AT1G07770.1; AT1G07770.
AT1G07770.2; AT1G07770.2; AT1G07770.
AT5G59850.1; AT5G59850.1; AT5G59850.
GeneIDi836107.
837291.
GrameneiAT1G07770.1; AT1G07770.1; AT1G07770.
AT1G07770.2; AT1G07770.2; AT1G07770.
AT5G59850.1; AT5G59850.1; AT5G59850.
KEGGiath:AT1G07770.
ath:AT5G59850.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L27461 Genomic DNA. Translation: AAA61608.1.
AF001412 mRNA. Translation: AAB58750.1.
AC007583 Genomic DNA. Translation: AAF75076.1.
AB015475 Genomic DNA. Translation: BAB08353.1.
CP002684 Genomic DNA. Translation: AEE28177.1.
CP002684 Genomic DNA. Translation: AEE28178.1.
CP002688 Genomic DNA. Translation: AED97242.1.
AF332447 mRNA. Translation: AAG48810.1.
AF360284 mRNA. Translation: AAK25994.1.
AF386922 mRNA. Translation: AAK62367.1.
AY042830 mRNA. Translation: AAK68770.1.
AY051040 mRNA. Translation: AAK93717.1.
AY081472 mRNA. Translation: AAM10034.1.
AY081689 mRNA. Translation: AAM10251.1.
AY035157 mRNA. Translation: AAK59661.1.
AY063028 mRNA. Translation: AAL34202.1.
BT000671 mRNA. Translation: AAN31818.1.
AY088335 mRNA. Translation: AAM65874.1.
AY087576 mRNA. Translation: AAM65118.1.
PIRiB86213.
RefSeqiNP_172256.1. NM_100651.4.
NP_200793.1. NM_125378.3.
NP_973783.1. NM_202054.3.
UniGeneiAt.21259.
At.23585.
At.57582.
At.6667.

3D structure databases

ProteinModelPortaliP42798.
SMRiP42798. Positions 3-130.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi21351. 1 interaction.
22532. 2 interactions.
IntActiP42798. 1 interaction.
STRINGi3702.AT5G59850.1.

Proteomic databases

PaxDbiP42798.
PRIDEiP42798.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G07770.1; AT1G07770.1; AT1G07770.
AT1G07770.2; AT1G07770.2; AT1G07770.
AT5G59850.1; AT5G59850.1; AT5G59850.
GeneIDi836107.
837291.
GrameneiAT1G07770.1; AT1G07770.1; AT1G07770.
AT1G07770.2; AT1G07770.2; AT1G07770.
AT5G59850.1; AT5G59850.1; AT5G59850.
KEGGiath:AT1G07770.
ath:AT5G59850.

Organism-specific databases

TAIRiAT1G07770.
AT5G59850.

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
HOGENOMiHOG000204097.
InParanoidiP42798.
KOiK02957.
OMAiWEKQFLP.
OrthoDBiEOG09360S3L.
PhylomeDBiP42798.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP42798.

Gene expression databases

ExpressionAtlasiP42798. baseline and differential.
GenevisibleiP42798. AT.

Family and domain databases

HAMAPiMF_01302_A. Ribosomal_S8_A. 1 hit.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiR15A1_ARATH
AccessioniPrimary (citable) accession number: P42798
Secondary accession number(s): Q7GD83
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 124 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.