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Protein

40S ribosomal protein S15a-1

Gene

RPS15AA

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • ribosome assembly Source: CAFA
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S15a-1
Gene namesi
Name:RPS15AA
Ordered Locus Names:At1g07770
ORF Names:F24B9.12
AND
Name:RPS15AF
Ordered Locus Names:At5g59850
ORF Names:MMN10.16, MMN10.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 1, Chromosome 5

Organism-specific databases

AraportiAT1G07770.
AT5G59850.
TAIRilocus:2026525. AT1G07770.
locus:2168118. AT5G59850.

Subcellular locationi

GO - Cellular componenti

  • cell wall Source: TAIR
  • cytosol Source: TAIR
  • cytosolic ribosome Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • membrane Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
  • polysomal ribosome Source: CAFA
  • vacuolar membrane Source: TAIR

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001266121 – 13040S ribosomal protein S15a-1Add BLAST130

Proteomic databases

PaxDbiP42798.
PRIDEiP42798.

Expressioni

Gene expression databases

ExpressionAtlasiP42798. baseline and differential.
GenevisibleiP42798. AT.

Interactioni

Protein-protein interaction databases

BioGridi21351. 1 interactor.
22532. 2 interactors.
IntActiP42798. 1 interactor.
STRINGi3702.AT5G59850.1.

Structurei

3D structure databases

ProteinModelPortaliP42798.
SMRiP42798.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
HOGENOMiHOG000204097.
InParanoidiP42798.
KOiK02957.
OMAiLPAKNFG.
OrthoDBiEOG09360S3L.
PhylomeDBiP42798.

Family and domain databases

HAMAPiMF_01302_A. Ribosomal_S8_A. 1 hit.
InterProiView protein in InterPro
IPR000630. Ribosomal_S8.
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiView protein in Pfam
PF00410. Ribosomal_S8. 1 hit.
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiView protein in PROSITE
PS00053. RIBOSOMAL_S8. 1 hit.

Sequencei

Sequence statusi: Complete.

P42798-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRISVLNDA LKSMYNAEKR GKRQVMIRPS SKVIIKFLIV MQKHGYIGEF
60 70 80 90 100
EYVDDHRSGK IVVELNGRLN KCGVISPRFD VGVKEIEGWT ARLLPSRQFG
110 120 130
YIVLTTSAGI MDHEEARRKN VGGKVLGFFY
Length:130
Mass (Da):14,804
Last modified:January 23, 2007 - v2
Checksum:i1CCA1A23525507C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L27461 Genomic DNA. Translation: AAA61608.1.
AF001412 mRNA. Translation: AAB58750.1.
AC007583 Genomic DNA. Translation: AAF75076.1.
AB015475 Genomic DNA. Translation: BAB08353.1.
CP002684 Genomic DNA. Translation: AEE28177.1.
CP002684 Genomic DNA. Translation: AEE28178.1.
CP002684 Genomic DNA. Translation: ANM58067.1.
CP002688 Genomic DNA. Translation: AED97242.1.
AF332447 mRNA. Translation: AAG48810.1.
AF360284 mRNA. Translation: AAK25994.1.
AF386922 mRNA. Translation: AAK62367.1.
AY042830 mRNA. Translation: AAK68770.1.
AY051040 mRNA. Translation: AAK93717.1.
AY081472 mRNA. Translation: AAM10034.1.
AY081689 mRNA. Translation: AAM10251.1.
AY035157 mRNA. Translation: AAK59661.1.
AY063028 mRNA. Translation: AAL34202.1.
BT000671 mRNA. Translation: AAN31818.1.
AY088335 mRNA. Translation: AAM65874.1.
AY087576 mRNA. Translation: AAM65118.1.
PIRiB86213.
RefSeqiNP_001318947.1. NM_001331728.1.
NP_172256.1. NM_100651.5.
NP_200793.1. NM_125378.4.
NP_973783.1. NM_202054.3.
UniGeneiAt.21259.
At.23585.
At.57582.
At.6667.

Genome annotation databases

EnsemblPlantsiAT1G07770.1; AT1G07770.1; AT1G07770.
AT1G07770.2; AT1G07770.2; AT1G07770.
AT1G07770.3; AT1G07770.3; AT1G07770.
AT5G59850.1; AT5G59850.1; AT5G59850.
GeneIDi836107.
837291.
GrameneiAT1G07770.1; AT1G07770.1; AT1G07770.
AT1G07770.2; AT1G07770.2; AT1G07770.
AT1G07770.3; AT1G07770.3; AT1G07770.
AT5G59850.1; AT5G59850.1; AT5G59850.
KEGGiath:AT1G07770.
ath:AT5G59850.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiR15A1_ARATH
AccessioniPrimary (citable) accession number: P42798
Secondary accession number(s): Q7GD83
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 132 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families