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Protein

60S ribosomal protein L18-2

Gene

RPL18B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L18-2
Gene namesi
Name:RPL18B
Ordered Locus Names:At3g05590
ORF Names:F18C1.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G05590.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • cytosolic large ribosomal subunit Source: TAIR
  • large ribosomal subunit Source: TAIR
  • plasma membrane Source: TAIR
  • vacuolar membrane Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 18718760S ribosomal protein L18-2PRO_0000132780Add
BLAST

Proteomic databases

PaxDbiP42791.
PRIDEiP42791.

PTM databases

iPTMnetiP42791.

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

GenevisibleiP42791. AT.

Interactioni

Subunit structurei

Interacts with NIK1.1 Publication

Protein-protein interaction databases

BioGridi5060. 5 interactions.
IntActiP42791. 1 interaction.
STRINGi3702.AT3G05590.1.

Structurei

3D structure databases

ProteinModelPortaliP42791.
SMRiP42791. Positions 55-120.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L18e family.Curated

Phylogenomic databases

eggNOGiKOG1714. Eukaryota.
COG1727. LUCA.
HOGENOMiHOG000213425.
InParanoidiP42791.
KOiK02883.
OMAiRIAPKSD.
OrthoDBiEOG09360NRB.
PhylomeDBiP42791.

Family and domain databases

InterProiIPR000039. Ribosomal_L18e.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR10934. PTHR10934. 1 hit.
PfamiPF17135. Ribosomal_L18. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.

Sequencei

Sequence statusi: Complete.

P42791-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK
60 70 80 90 100
RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
110 120 130 140 150
ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH
160 170 180
FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Length:187
Mass (Da):20,926
Last modified:June 6, 2002 - v2
Checksum:iDDC72C02B12CBCAB
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti59 – 591K → R in AAA69928 (PubMed:7875584).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U15741 mRNA. Translation: AAA69928.1.
AC011620 Genomic DNA. Translation: AAF26138.1.
CP002686 Genomic DNA. Translation: AEE74263.1.
AY037224 mRNA. Translation: AAK59824.1.
AY060533 mRNA. Translation: AAL31164.1.
RefSeqiNP_187210.1. NM_111432.3.
UniGeneiAt.12935.
At.24595.
At.460.

Genome annotation databases

EnsemblPlantsiAT3G05590.1; AT3G05590.1; AT3G05590.
GeneIDi819725.
GrameneiAT3G05590.1; AT3G05590.1; AT3G05590.
KEGGiath:AT3G05590.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U15741 mRNA. Translation: AAA69928.1.
AC011620 Genomic DNA. Translation: AAF26138.1.
CP002686 Genomic DNA. Translation: AEE74263.1.
AY037224 mRNA. Translation: AAK59824.1.
AY060533 mRNA. Translation: AAL31164.1.
RefSeqiNP_187210.1. NM_111432.3.
UniGeneiAt.12935.
At.24595.
At.460.

3D structure databases

ProteinModelPortaliP42791.
SMRiP42791. Positions 55-120.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi5060. 5 interactions.
IntActiP42791. 1 interaction.
STRINGi3702.AT3G05590.1.

PTM databases

iPTMnetiP42791.

Proteomic databases

PaxDbiP42791.
PRIDEiP42791.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G05590.1; AT3G05590.1; AT3G05590.
GeneIDi819725.
GrameneiAT3G05590.1; AT3G05590.1; AT3G05590.
KEGGiath:AT3G05590.

Organism-specific databases

TAIRiAT3G05590.

Phylogenomic databases

eggNOGiKOG1714. Eukaryota.
COG1727. LUCA.
HOGENOMiHOG000213425.
InParanoidiP42791.
KOiK02883.
OMAiRIAPKSD.
OrthoDBiEOG09360NRB.
PhylomeDBiP42791.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP42791.

Gene expression databases

GenevisibleiP42791. AT.

Family and domain databases

InterProiIPR000039. Ribosomal_L18e.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR10934. PTHR10934. 1 hit.
PfamiPF17135. Ribosomal_L18. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL182_ARATH
AccessioniPrimary (citable) accession number: P42791
Secondary accession number(s): Q9M9W4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: June 6, 2002
Last modified: September 7, 2016
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.