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Protein

60S ribosomal protein L18-2

Gene

RPL18B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L18-2
Gene namesi
Name:RPL18B
Ordered Locus Names:At3g05590
ORF Names:F18C1.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G05590
TAIRilocus:2078077 AT3G05590

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001327801 – 18760S ribosomal protein L18-2Add BLAST187

Proteomic databases

PaxDbiP42791
PRIDEiP42791

PTM databases

iPTMnetiP42791

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

ExpressionAtlasiP42791 baseline and differential
GenevisibleiP42791 AT

Interactioni

Subunit structurei

Interacts with NIK1.1 Publication

Protein-protein interaction databases

BioGridi5060, 5 interactors
IntActiP42791, 1 interactor
STRINGi3702.AT3G05590.1

Structurei

3D structure databases

ProteinModelPortaliP42791
SMRiP42791
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1714 Eukaryota
COG1727 LUCA
HOGENOMiHOG000213425
InParanoidiP42791
KOiK02883
OMAiAYEVPKL
OrthoDBiEOG09360NRB
PhylomeDBiP42791

Family and domain databases

InterProiView protein in InterPro
IPR036227 L18e/L15P_sf
IPR000039 Ribosomal_L18e
IPR021131 Ribosomal_L18e/L15P
PANTHERiPTHR10934 PTHR10934, 1 hit
PfamiView protein in Pfam
PF17135 Ribosomal_L18, 1 hit
SUPFAMiSSF52080 SSF52080, 1 hit

Sequencei

Sequence statusi: Complete.

P42791-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK
60 70 80 90 100
RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
110 120 130 140 150
ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH
160 170 180
FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Length:187
Mass (Da):20,926
Last modified:June 6, 2002 - v2
Checksum:iDDC72C02B12CBCAB
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti59K → R in AAA69928 (PubMed:7875584).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U15741 mRNA Translation: AAA69928.1
AC011620 Genomic DNA Translation: AAF26138.1
CP002686 Genomic DNA Translation: AEE74263.1
AY037224 mRNA Translation: AAK59824.1
AY060533 mRNA Translation: AAL31164.1
RefSeqiNP_187210.1, NM_111432.4
UniGeneiAt.12935
At.24595
At.460

Genome annotation databases

EnsemblPlantsiAT3G05590.1; AT3G05590.1; AT3G05590
GeneIDi819725
GrameneiAT3G05590.1; AT3G05590.1; AT3G05590
KEGGiath:AT3G05590

Similar proteinsi

Entry informationi

Entry nameiRL182_ARATH
AccessioniPrimary (citable) accession number: P42791
Secondary accession number(s): Q9M9W4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: June 6, 2002
Last modified: April 25, 2018
This is version 125 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health