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Protein

Ethylene-responsive transcription factor RAP2-3

Gene

RAP2-3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi78 – 13558AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB
  • sequence-specific DNA binding transcription factor activity Source: TAIR

GO - Biological processi

  • cell death Source: TAIR
  • ethylene-activated signaling pathway Source: TAIR
  • heat acclimation Source: TAIR
  • positive regulation of transcription, DNA-templated Source: TAIR
  • response to cytokinin Source: TAIR
  • response to ethylene Source: UniProtKB
  • response to jasmonic acid Source: UniProtKB
  • response to other organism Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

Cadmium, DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor RAP2-3
Alternative name(s):
Cadmium-induced protein AS30
Ethylene response factor 72
Short name:
ERF72
Ethylene-responsive element binding protein
Short name:
AtEBP
Protein RELATED TO APETALA2 3
Short name:
Related to AP2 3
Gene namesi
Name:RAP2-3
Synonyms:EBP, ERF072
Ordered Locus Names:At3g16770
ORF Names:MGL6.1, MGL6.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G16770.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: UniProtKB
  • nucleus Source: UniProtKB
  • plasma membrane Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Cytoplasm, Membrane, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 248248Ethylene-responsive transcription factor RAP2-3PRO_0000112523Add
BLAST

Expressioni

Tissue specificityi

Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers.2 Publications

Inductioni

By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium.2 Publications

Gene expression databases

GenevestigatoriP42736.

Interactioni

Subunit structurei

Interacts with TGA4/OBF4, ACBP2, and ACBP4.3 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
ACBP2Q9STP83EBI-368243,EBI-368234
ACBP4Q9MA554EBI-368243,EBI-2009699

Protein-protein interaction databases

BioGridi6263. 4 interactions.
IntActiP42736. 3 interactions.
STRINGi3702.AT3G16770.1-P.

Structurei

3D structure databases

ProteinModelPortaliP42736.
SMRiP42736. Positions 79-135.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi140 – 1434Poly-Pro

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG300006.
HOGENOMiHOG000237624.
InParanoidiP42736.
KOiK09286.
OMAiFLMEDFA.
PhylomeDBiP42736.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42736-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP
60 70 80 90 100
TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
110 120 130 140 150
VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS
160 170 180 190 200
SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
210 220 230 240
DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Length:248
Mass (Da):27,758
Last modified:January 10, 2003 - v2
Checksum:i317D50CC514782F1
GO

Sequence cautioni

The sequence CAA71073.1 differs from that shown. Reason: Erroneous translation. Wrong choice of frame.Curated
The sequence CAA85734.1 differs from that shown.Probable cloning artifact leading to an insertion into the sequence.Curated
The sequence CAA85734.1 differs from that shown. Reason: Frameshift at position 20. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti42 – 421F → N in CAA85734 (Ref. 2) Curated
Sequence conflicti121 – 1211A → P in CAA85734 (Ref. 2) Curated
Sequence conflicti223 – 2242EQ → AR in CAA71073 (PubMed:9159183).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09942 mRNA. Translation: CAA71073.1. Sequence problems.
Z37504 mRNA. Translation: CAA85734.1. Sequence problems.
AF003096 mRNA. Translation: AAC49769.1.
AB022217 Genomic DNA. Translation: BAB02769.1.
CP002686 Genomic DNA. Translation: AEE75863.1.
AY059917 mRNA. Translation: AAL24399.1.
AY035100 mRNA. Translation: AAK59605.1.
AY142562 mRNA. Translation: AAN13131.1.
AY087488 mRNA. Translation: AAM65031.1.
RefSeqiNP_188299.1. NM_112550.4.
UniGeneiAt.24773.

Genome annotation databases

EnsemblPlantsiAT3G16770.1; AT3G16770.1; AT3G16770.
GeneIDi820929.
KEGGiath:AT3G16770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09942 mRNA. Translation: CAA71073.1. Sequence problems.
Z37504 mRNA. Translation: CAA85734.1. Sequence problems.
AF003096 mRNA. Translation: AAC49769.1.
AB022217 Genomic DNA. Translation: BAB02769.1.
CP002686 Genomic DNA. Translation: AEE75863.1.
AY059917 mRNA. Translation: AAL24399.1.
AY035100 mRNA. Translation: AAK59605.1.
AY142562 mRNA. Translation: AAN13131.1.
AY087488 mRNA. Translation: AAM65031.1.
RefSeqiNP_188299.1. NM_112550.4.
UniGeneiAt.24773.

3D structure databases

ProteinModelPortaliP42736.
SMRiP42736. Positions 79-135.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi6263. 4 interactions.
IntActiP42736. 3 interactions.
STRINGi3702.AT3G16770.1-P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G16770.1; AT3G16770.1; AT3G16770.
GeneIDi820929.
KEGGiath:AT3G16770.

Organism-specific databases

TAIRiAT3G16770.

Phylogenomic databases

eggNOGiNOG300006.
HOGENOMiHOG000237624.
InParanoidiP42736.
KOiK09286.
OMAiFLMEDFA.
PhylomeDBiP42736.

Miscellaneous databases

PROiP42736.

Gene expression databases

GenevestigatoriP42736.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Arabidopsis thaliana ethylene-responsive element binding protein (AtEBP), an ethylene-inducible, GCC box DNA-binding protein interacts with an ocs element binding protein."
    Buettner M., Singh K.B.
    Proc. Natl. Acad. Sci. U.S.A. 94:5961-5966(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, INTERACTION WITH TGA4/OBF4, INDUCTION BY ETHYLENE.
    Strain: cv. Columbia.
    Tissue: Callus.
  2. Choi S., Baek E., Lee S.
    Submitted (SEP-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Columbia.
  3. "The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis."
    Okamuro J.K., Caster B., Villarroel R., Van Montagu M., Jofuku K.D.
    Proc. Natl. Acad. Sci. U.S.A. 94:7076-7081(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
  4. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  5. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  6. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  7. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  8. "Arabidopsis Acyl-CoA-binding protein ACBP2 interacts with an ethylene-responsive element-binding protein, AtEBP, via its ankyrin repeats."
    Li H.-Y., Chye M.-L.
    Plant Mol. Biol. 54:233-243(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION, INTERACTION WITH ACBP2.
  9. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  10. "Ethylene- and pathogen-inducible Arabidopsis acyl-CoA-binding protein 4 interacts with an ethylene-responsive element binding protein."
    Li H.-Y., Xiao S., Chye M.-L.
    J. Exp. Bot. 59:3997-4006(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION, INDUCTION BY ETHYLENE; JASMONATE AND BOTRYTIS CINEREA, TISSUE SPECIFICITY, INTERACTION WITH ACBP4.

Entry informationi

Entry nameiRAP23_ARATH
AccessioniPrimary (citable) accession number: P42736
Secondary accession number(s): O04382, O23105
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: January 10, 2003
Last modified: May 27, 2015
This is version 127 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.