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Protein

40S ribosomal protein S11-3

Gene

RPS11C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S11-3
Gene namesi
Name:RPS11C
Ordered Locus Names:At5g23740
ORF Names:MRO11.22
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRilocus:2172783. AT5G23740.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: GO_Central
  • membrane Source: TAIR

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001285171 – 15940S ribosomal protein S11-3Add BLAST159

Proteomic databases

PaxDbiP42733.
PRIDEiP42733.

PTM databases

iPTMnetiP42733.

Expressioni

Gene expression databases

ExpressionAtlasiP42733. baseline and differential.
GenevisibleiP42733. AT.

Interactioni

Protein-protein interaction databases

BioGridi17714. 3 interactors.
STRINGi3702.AT5G23740.1.

Structurei

3D structure databases

ProteinModelPortaliP42733.
SMRiP42733.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.Curated

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
HOGENOMiHOG000231341.
InParanoidiP42733.
KOiK02949.
OMAiACVFLAN.
OrthoDBiEOG09360QR2.
PhylomeDBiP42733.

Family and domain databases

InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiView protein in Pfam
PF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
PRINTSiPR00973. RIBOSOMALS17.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001295. Ribosomal_S17. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00056. RIBOSOMAL_S17. 1 hit.

Sequencei

Sequence statusi: Complete.

P42733-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEQTEKAFL KQPKVFLSSK ISGKGKRPGK GGNRFWKNIG LGFKTPREAI
60 70 80 90 100
DGAYIDSKCP FTGTVSIRGR ILAGTCHSAK MQRTIIVRRN YLHFVKKYQR
110 120 130 140 150
YEKRHSNIPA HVSPCFRVKE GDHVIIGQCR PLSKTVRFNV LKVIPAGASA

FGKKAFTGV
Length:159
Mass (Da):17,749
Last modified:January 10, 2003 - v2
Checksum:i113DF30E5BD1876B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti90N → D in AAA32867 (PubMed:8108522).Curated1
Sequence conflicti99Q → P in AAA32867 (PubMed:8108522).Curated1
Sequence conflicti107N → H in AAA32867 (PubMed:8108522).Curated1
Sequence conflicti146A → T in AAA32867 (PubMed:8108522).Curated1
Sequence conflicti156F → L in AAA32867 (PubMed:8108522).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L07877 mRNA. Translation: AAA32867.1.
AB005244 Genomic DNA. Translation: BAB10047.1.
CP002688 Genomic DNA. Translation: AED93206.1.
AF360280 mRNA. Translation: AAK25990.1.
AY062955 mRNA. Translation: AAL33787.1.
AY087240 mRNA. Translation: AAM64796.1.
RefSeqiNP_197763.1. NM_122279.4.
UniGeneiAt.20778.
At.21971.

Genome annotation databases

EnsemblPlantsiAT5G23740.1; AT5G23740.1; AT5G23740.
GeneIDi832439.
GrameneiAT5G23740.1; AT5G23740.1; AT5G23740.
KEGGiath:AT5G23740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L07877 mRNA. Translation: AAA32867.1.
AB005244 Genomic DNA. Translation: BAB10047.1.
CP002688 Genomic DNA. Translation: AED93206.1.
AF360280 mRNA. Translation: AAK25990.1.
AY062955 mRNA. Translation: AAL33787.1.
AY087240 mRNA. Translation: AAM64796.1.
RefSeqiNP_197763.1. NM_122279.4.
UniGeneiAt.20778.
At.21971.

3D structure databases

ProteinModelPortaliP42733.
SMRiP42733.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi17714. 3 interactors.
STRINGi3702.AT5G23740.1.

PTM databases

iPTMnetiP42733.

Proteomic databases

PaxDbiP42733.
PRIDEiP42733.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G23740.1; AT5G23740.1; AT5G23740.
GeneIDi832439.
GrameneiAT5G23740.1; AT5G23740.1; AT5G23740.
KEGGiath:AT5G23740.

Organism-specific databases

AraportiAT5G23740.
TAIRilocus:2172783. AT5G23740.

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
HOGENOMiHOG000231341.
InParanoidiP42733.
KOiK02949.
OMAiACVFLAN.
OrthoDBiEOG09360QR2.
PhylomeDBiP42733.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP42733.

Gene expression databases

ExpressionAtlasiP42733. baseline and differential.
GenevisibleiP42733. AT.

Family and domain databases

InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiView protein in Pfam
PF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
PRINTSiPR00973. RIBOSOMALS17.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001295. Ribosomal_S17. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00056. RIBOSOMAL_S17. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS113_ARATH
AccessioniPrimary (citable) accession number: P42733
Secondary accession number(s): Q9FFA6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: January 10, 2003
Last modified: March 15, 2017
This is version 120 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.