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Protein

UPF0597 protein YhaM

Gene

yhaM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7622-MONOMER.
ECOL316407:JW5518-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0597 protein YhaMUniRule annotation
Gene namesi
Name:yhaMUniRule annotation
Synonyms:yhaN
Ordered Locus Names:b4470, JW5518
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12752. yhaM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001694481 – 436UPF0597 protein YhaMAdd BLAST436

Proteomic databases

PaxDbiP42626.
PRIDEiP42626.

Interactioni

Protein-protein interaction databases

BioGridi4259262. 13 interactors.
STRINGi511145.b4470.

Structurei

3D structure databases

ProteinModelPortaliP42626.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0597 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CEM. Bacteria.
COG3681. LUCA.
HOGENOMiHOG000237280.
InParanoidiP42626.
OMAiYIKQSLG.
PhylomeDBiP42626.

Family and domain databases

HAMAPiMF_01845. UPF0597. 1 hit.
InterProiIPR005130. Ser_deHydtase-like_asu.
IPR021144. UPF0597.
[Graphical view]
PfamiPF03313. SDH_alpha. 1 hit.
[Graphical view]
PIRSFiPIRSF006054. UCP006054. 1 hit.

Sequencei

Sequence statusi: Complete.

P42626-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFDSTLNPLW QRYILAVQEE VKPALGCTEP ISLALAAAVA AAELEGPVER
60 70 80 90 100
VEAWVSPNLM KNGLGVTVPG TGMVGLPIAA ALGALGGNAN AGLEVLKDAT
110 120 130 140 150
AQAIADAKAL LAAGKVSVKI QEPCDEILFS RAKVWNGEKW ACVTIVGGHT
160 170 180 190 200
NIVHIETHDG VVFTQQACVA EGEQESPLTV LSRTTLAEIL KFVNEVPFAA
210 220 230 240 250
IRFILDSAKL NCALSQEGLS GKWGLHIGAT LEKQCERGLL AKDLSSSIVI
260 270 280 290 300
RTSAASDARM GGATLPAMSN SGSGNQGITA TMPVVVVAEH FGADDERLAR
310 320 330 340 350
ALMLSHLSAI YIHNQLPRLS ALCAATTAAM GAAAGMAWLV DGRYETISMA
360 370 380 390 400
ISSMIGDVSG MICDGASNSC AMKVSTSASA AWKAVLMALD DTAVTGNEGI
410 420 430
VAHDVEQSIA NLCALASHSM QQTDRQIIEI MASKAR
Length:436
Mass (Da):45,361
Last modified:October 11, 2004 - v3
Checksum:i3506FB665AAE2BBB
GO

Sequence cautioni

The sequence AAA57912 differs from that shown. Reason: Frameshift at position 185.Curated
The sequence AAA57913 differs from that shown. Reason: Frameshift at position 185.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57912.1. Frameshift.
U18997 Genomic DNA. Translation: AAA57913.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48167.1.
AP009048 Genomic DNA. Translation: BAE77158.1.
RefSeqiWP_000460499.1. NZ_LN832404.1.
YP_026202.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48167; AAT48167; b4470.
BAE77158; BAE77158; BAE77158.
GeneIDi2847723.
KEGGiecj:JW5518.
eco:b4470.
PATRICi32121636. VBIEscCol129921_3204.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57912.1. Frameshift.
U18997 Genomic DNA. Translation: AAA57913.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48167.1.
AP009048 Genomic DNA. Translation: BAE77158.1.
RefSeqiWP_000460499.1. NZ_LN832404.1.
YP_026202.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP42626.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259262. 13 interactors.
STRINGi511145.b4470.

Proteomic databases

PaxDbiP42626.
PRIDEiP42626.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48167; AAT48167; b4470.
BAE77158; BAE77158; BAE77158.
GeneIDi2847723.
KEGGiecj:JW5518.
eco:b4470.
PATRICi32121636. VBIEscCol129921_3204.

Organism-specific databases

EchoBASEiEB2608.
EcoGeneiEG12752. yhaM.

Phylogenomic databases

eggNOGiENOG4105CEM. Bacteria.
COG3681. LUCA.
HOGENOMiHOG000237280.
InParanoidiP42626.
OMAiYIKQSLG.
PhylomeDBiP42626.

Enzyme and pathway databases

BioCyciEcoCyc:G7622-MONOMER.
ECOL316407:JW5518-MONOMER.

Miscellaneous databases

PROiP42626.

Family and domain databases

HAMAPiMF_01845. UPF0597. 1 hit.
InterProiIPR005130. Ser_deHydtase-like_asu.
IPR021144. UPF0597.
[Graphical view]
PfamiPF03313. SDH_alpha. 1 hit.
[Graphical view]
PIRSFiPIRSF006054. UCP006054. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYHAM_ECOLI
AccessioniPrimary (citable) accession number: P42626
Secondary accession number(s): P42627, Q2M998, Q6BF47
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 100 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.