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Protein

Inner membrane protein YqjF

Gene

yqjF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7615-MONOMER.
ECOL316407:JW5850-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YqjF
Gene namesi
Name:yqjF
Ordered Locus Names:b3101, JW5850
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12745. yqjF.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 5CytoplasmicSequence analysis5
Transmembranei6 – 26HelicalSequence analysisAdd BLAST21
Topological domaini27 – 45PeriplasmicSequence analysisAdd BLAST19
Transmembranei46 – 66HelicalSequence analysisAdd BLAST21
Topological domaini67 – 70CytoplasmicSequence analysis4
Transmembranei71 – 91HelicalSequence analysisAdd BLAST21
Topological domaini92 – 101PeriplasmicSequence analysis10
Transmembranei102 – 122HelicalSequence analysisAdd BLAST21
Topological domaini123 – 130CytoplasmicSequence analysis8

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001694351 – 130Inner membrane protein YqjFAdd BLAST130

Proteomic databases

PaxDbiP42619.
PRIDEiP42619.

Interactioni

Protein-protein interaction databases

BioGridi4259661. 3 interactors.
STRINGi511145.b3101.

Structurei

3D structure databases

ProteinModelPortaliP42619.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DoxX family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108VBZ. Bacteria.
COG2259. LUCA.
HOGENOMiHOG000198398.
InParanoidiP42619.
KOiK15977.
OMAiRILLSFM.

Family and domain databases

InterProiIPR032808. DoxX.
[Graphical view]
PfamiPF07681. DoxX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P42619-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKLEDVGVL VARILMPILF ITAGWGKITG YAGTQQYMEA MGVPGFMLPL
60 70 80 90 100
VILLEFGGGL AILFGFLTRT TALFTAGFTL LTAFLFHSNF AEGVNSLMFM
110 120 130
KNLTISGGFL LLAITGPGAY SIDRLLNKKW
Length:130
Mass (Da):14,102
Last modified:December 1, 2000 - v2
Checksum:iD8C2D8FE4DF966A4
GO

Sequence cautioni

The sequence AAA57905 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57905.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76136.2.
AP009048 Genomic DNA. Translation: BAE77151.1.
RefSeqiNP_417572.2. NC_000913.3.
WP_000732240.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76136; AAC76136; b3101.
BAE77151; BAE77151; BAE77151.
GeneIDi947608.
KEGGiecj:JW5850.
eco:b3101.
PATRICi32121622. VBIEscCol129921_3197.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57905.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76136.2.
AP009048 Genomic DNA. Translation: BAE77151.1.
RefSeqiNP_417572.2. NC_000913.3.
WP_000732240.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP42619.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259661. 3 interactors.
STRINGi511145.b3101.

Proteomic databases

PaxDbiP42619.
PRIDEiP42619.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76136; AAC76136; b3101.
BAE77151; BAE77151; BAE77151.
GeneIDi947608.
KEGGiecj:JW5850.
eco:b3101.
PATRICi32121622. VBIEscCol129921_3197.

Organism-specific databases

EchoBASEiEB2601.
EcoGeneiEG12745. yqjF.

Phylogenomic databases

eggNOGiENOG4108VBZ. Bacteria.
COG2259. LUCA.
HOGENOMiHOG000198398.
InParanoidiP42619.
KOiK15977.
OMAiRILLSFM.

Enzyme and pathway databases

BioCyciEcoCyc:G7615-MONOMER.
ECOL316407:JW5850-MONOMER.

Miscellaneous databases

PROiP42619.

Family and domain databases

InterProiIPR032808. DoxX.
[Graphical view]
PfamiPF07681. DoxX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYQJF_ECOLI
AccessioniPrimary (citable) accession number: P42619
Secondary accession number(s): Q2M9A5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: December 1, 2000
Last modified: November 2, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.