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Protein

Protein YqjC

Gene

yqjC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7611-MONOMER.
ECOL316407:JW5516-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YqjC
Gene namesi
Name:yqjC
Ordered Locus Names:b3097, JW5516
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12742. yqjC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Chaini21 – 122102Protein YqjCPRO_0000013907Add
BLAST

Proteomic databases

PaxDbiP42616.
PRIDEiP42616.

Interactioni

Protein-protein interaction databases

BioGridi4262024. 17 interactions.
STRINGi511145.b3097.

Structurei

3D structure databases

ProteinModelPortaliP42616.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105WAY. Bacteria.
ENOG41121W5. LUCA.
HOGENOMiHOG000281845.
InParanoidiP42616.
OMAiSEVKANC.
OrthoDBiEOG6HXJC4.
PhylomeDBiP42616.

Family and domain databases

InterProiIPR009468. DUF1090.
[Graphical view]
PfamiPF06476. DUF1090. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P42616-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYRIALAVS LFALSAGSYA TTLCQEKEQN ILKEISYAEK HQNQNRIDGL
60 70 80 90 100
NKALSEVRAN CSDSQLRADH QKKIAKQKDE VAERQQDLAE AKQKGDADKI
110 120
AKRERKLAEA QEELKKLEAR DY
Length:122
Mass (Da):13,906
Last modified:April 27, 2001 - v3
Checksum:i8F0454F662C78ECE
GO

Sequence cautioni

The sequence AAA57901.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti92 – 932KQ → NE in AAA57901 (PubMed:9278503).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57901.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76132.2.
AP009048 Genomic DNA. Translation: BAE77147.1.
RefSeqiNP_417568.2. NC_000913.3.
WP_001295543.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76132; AAC76132; b3097.
BAE77147; BAE77147; BAE77147.
GeneIDi947622.
KEGGiecj:JW5516.
eco:b3097.
PATRICi32121614. VBIEscCol129921_3193.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57901.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76132.2.
AP009048 Genomic DNA. Translation: BAE77147.1.
RefSeqiNP_417568.2. NC_000913.3.
WP_001295543.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP42616.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262024. 17 interactions.
STRINGi511145.b3097.

Proteomic databases

PaxDbiP42616.
PRIDEiP42616.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76132; AAC76132; b3097.
BAE77147; BAE77147; BAE77147.
GeneIDi947622.
KEGGiecj:JW5516.
eco:b3097.
PATRICi32121614. VBIEscCol129921_3193.

Organism-specific databases

EchoBASEiEB2598.
EcoGeneiEG12742. yqjC.

Phylogenomic databases

eggNOGiENOG4105WAY. Bacteria.
ENOG41121W5. LUCA.
HOGENOMiHOG000281845.
InParanoidiP42616.
OMAiSEVKANC.
OrthoDBiEOG6HXJC4.
PhylomeDBiP42616.

Enzyme and pathway databases

BioCyciEcoCyc:G7611-MONOMER.
ECOL316407:JW5516-MONOMER.

Miscellaneous databases

PROiP42616.

Family and domain databases

InterProiIPR009468. DUF1090.
[Graphical view]
PfamiPF06476. DUF1090. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography."
    Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.
    Electrophoresis 20:2181-2195(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY.
    Strain: B / BL21.

Entry informationi

Entry nameiYQJC_ECOLI
AccessioniPrimary (citable) accession number: P42616
Secondary accession number(s): Q2M9A9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: April 27, 2001
Last modified: January 20, 2016
This is version 88 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.