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Protein

Inner membrane protein YgjV

Gene

ygjV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7608-MONOMER.
ECOL316407:JW3061-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YgjV
Gene namesi
Name:ygjV
Ordered Locus Names:b3090, JW3061
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12733. ygjV.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 22PeriplasmicSequence analysis
Transmembranei3 – 2321HelicalSequence analysisAdd
BLAST
Topological domaini24 – 3815CytoplasmicSequence analysisAdd
BLAST
Transmembranei39 – 5921HelicalSequence analysisAdd
BLAST
Topological domaini60 – 7112PeriplasmicSequence analysisAdd
BLAST
Transmembranei72 – 9221HelicalSequence analysisAdd
BLAST
Transmembranei93 – 11321HelicalSequence analysisAdd
BLAST
Topological domaini114 – 13320PeriplasmicSequence analysisAdd
BLAST
Transmembranei134 – 15421HelicalSequence analysisAdd
BLAST
Topological domaini155 – 18329CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of plasma membrane Source: EcoliWiki
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183Inner membrane protein YgjVPRO_0000169426Add
BLAST

Proteomic databases

PaxDbiP42603.

Interactioni

Protein-protein interaction databases

BioGridi4262406. 11 interactions.
STRINGi511145.b3090.

Structurei

3D structure databases

ProteinModelPortaliP42603.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105P66. Bacteria.
ENOG410XT5W. LUCA.
HOGENOMiHOG000125147.
OMAiLFNSFCW.
OrthoDBiEOG6NKR0P.

Family and domain databases

InterProiIPR019629. Uncharacterised_HI1736/YgjV.
IPR026267. YgjV.
[Graphical view]
PfamiPF10688. Imp-YgjV. 1 hit.
[Graphical view]
PIRSFiPIRSF011443. YgjV. 1 hit.

Sequencei

Sequence statusi: Complete.

P42603-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAYWLAQGV GVIAFLIGIT TFFNRDERRF KKQLSVYSAV IGVHFFLLGT
60 70 80 90 100
YPAGASAILN AIRTLITLRT RSLWVMAIFI VLTGGIGLAK FHHPVELLPV
110 120 130 140 150
IGTIVSTWAL FCCKGLTMRC VMWFSTCCWV IHNFWAGSIG GTMIEGSFLL
160 170 180
MNGLNIIRFW RMQKRGIDPF KVEKTPSAVD ERG
Length:183
Mass (Da):20,512
Last modified:November 1, 1995 - v1
Checksum:iF7D5ECE3820BD821
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13328 Genomic DNA. No translation available.
U18997 Genomic DNA. Translation: AAA57892.1.
U00096 Genomic DNA. Translation: AAC76125.1.
AP009048 Genomic DNA. Translation: BAE77140.1.
PIRiG65097.
RefSeqiNP_417561.1. NC_000913.3.
WP_000128135.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76125; AAC76125; b3090.
BAE77140; BAE77140; BAE77140.
GeneIDi947604.
KEGGiecj:JW3061.
eco:b3090.
PATRICi32121598. VBIEscCol129921_3185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13328 Genomic DNA. No translation available.
U18997 Genomic DNA. Translation: AAA57892.1.
U00096 Genomic DNA. Translation: AAC76125.1.
AP009048 Genomic DNA. Translation: BAE77140.1.
PIRiG65097.
RefSeqiNP_417561.1. NC_000913.3.
WP_000128135.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP42603.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262406. 11 interactions.
STRINGi511145.b3090.

Proteomic databases

PaxDbiP42603.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76125; AAC76125; b3090.
BAE77140; BAE77140; BAE77140.
GeneIDi947604.
KEGGiecj:JW3061.
eco:b3090.
PATRICi32121598. VBIEscCol129921_3185.

Organism-specific databases

EchoBASEiEB2591.
EcoGeneiEG12733. ygjV.

Phylogenomic databases

eggNOGiENOG4105P66. Bacteria.
ENOG410XT5W. LUCA.
HOGENOMiHOG000125147.
OMAiLFNSFCW.
OrthoDBiEOG6NKR0P.

Enzyme and pathway databases

BioCyciEcoCyc:G7608-MONOMER.
ECOL316407:JW3061-MONOMER.

Miscellaneous databases

PROiP42603.

Family and domain databases

InterProiIPR019629. Uncharacterised_HI1736/YgjV.
IPR026267. YgjV.
[Graphical view]
PfamiPF10688. Imp-YgjV. 1 hit.
[Graphical view]
PIRSFiPIRSF011443. YgjV. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Mizobuchi K.
    Submitted (SEP-1992) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis."
    Drew D., Sjoestrand D., Nilsson J., Urbig T., Chin C.-N., de Gier J.-W., von Heijne G.
    Proc. Natl. Acad. Sci. U.S.A. 99:2690-2695(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY.
    Strain: K12 / JM109 / ATCC 53323.
  5. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYGJV_ECOLI
AccessioniPrimary (citable) accession number: P42603
Secondary accession number(s): Q2M9B6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: January 20, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.