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Protein

Uncharacterized oxidoreductase YgjR

Gene

ygjR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciEcoCyc:G7606-MONOMER.
ECOL316407:JW3058-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized oxidoreductase YgjR (EC:1.-.-.-)
Gene namesi
Name:ygjR
Ordered Locus Names:b3087, JW3058
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12729. ygjR.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei177 – 19317HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 328328Uncharacterized oxidoreductase YgjRPRO_0000091780Add
BLAST

Proteomic databases

PaxDbiP42599.
PRIDEiP42599.

Interactioni

Protein-protein interaction databases

BioGridi4262403. 11 interactions.
IntActiP42599. 10 interactions.
STRINGi511145.b3087.

Structurei

3D structure databases

ProteinModelPortaliP42599.
SMRiP42599. Positions 1-324.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Gfo/Idh/MocA family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105EE0. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000227441.
InParanoidiP42599.
OMAiLAVSHIT.
OrthoDBiEOG6GJBW3.
PhylomeDBiP42599.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

P42599-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRFAVIGTN WITRQFVEAA HESGKYKLTA VYSRSLEQAQ HFANDFSVEH
60 70 80 90 100
LFTSLEAMAE SDAIDAVYIA SPNSLHFSQT QLFLSHKINV ICEKPLASNL
110 120 130 140 150
AEVDAAIACA RENQVVLFEA FKTACLPNFH LLRQALPKVG KLRKVFFNYC
160 170 180 190 200
QYSSRYQRYL DGENPNTFNP AFSNGSIMDI GFYCLASAVA LFGEPKSVQA
210 220 230 240 250
TASLLASGVD AQGVVVMDYG DFSVTLQHSK VSDSVLASEI QGEAGSLVIE
260 270 280 290 300
KLSECQKVCF VPRGSQMQDL TQPQHINTML YEAELFATLV DEHLVDHPGL
310 320
AVSRITAKLL TEIRRQTGVI FPADSVKL
Length:328
Mass (Da):36,214
Last modified:December 15, 1998 - v3
Checksum:i9BADEEAD5CE379A2
GO

Sequence cautioni

The sequence BAE77137.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57888.1. Frameshift.
U18997 Genomic DNA. Translation: AAA57889.1. Frameshift.
U00096 Genomic DNA. Translation: AAC76122.2.
AP009048 Genomic DNA. Translation: BAE77137.1. Different initiation.
PIRiD65097.
RefSeqiNP_417558.2. NC_000913.3.
WP_000617698.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76122; AAC76122; b3087.
BAE77137; BAE77137; BAE77137.
GeneIDi947600.
KEGGiecj:JW3058.
eco:b3087.
PATRICi32121592. VBIEscCol129921_3182.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57888.1. Frameshift.
U18997 Genomic DNA. Translation: AAA57889.1. Frameshift.
U00096 Genomic DNA. Translation: AAC76122.2.
AP009048 Genomic DNA. Translation: BAE77137.1. Different initiation.
PIRiD65097.
RefSeqiNP_417558.2. NC_000913.3.
WP_000617698.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP42599.
SMRiP42599. Positions 1-324.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262403. 11 interactions.
IntActiP42599. 10 interactions.
STRINGi511145.b3087.

Proteomic databases

PaxDbiP42599.
PRIDEiP42599.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76122; AAC76122; b3087.
BAE77137; BAE77137; BAE77137.
GeneIDi947600.
KEGGiecj:JW3058.
eco:b3087.
PATRICi32121592. VBIEscCol129921_3182.

Organism-specific databases

EchoBASEiEB2588.
EcoGeneiEG12729. ygjR.

Phylogenomic databases

eggNOGiENOG4105EE0. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000227441.
InParanoidiP42599.
OMAiLAVSHIT.
OrthoDBiEOG6GJBW3.
PhylomeDBiP42599.

Enzyme and pathway databases

BioCyciEcoCyc:G7606-MONOMER.
ECOL316407:JW3058-MONOMER.

Miscellaneous databases

PROiP42599.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYGJR_ECOLI
AccessioniPrimary (citable) accession number: P42599
Secondary accession number(s): P42600, P76661, Q2M9B9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: December 15, 1998
Last modified: February 17, 2016
This is version 111 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.