Uncharacterized protein ygjK precursor - Escherichia coli (strain K12)

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Reviewed, UniProtKB/Swiss-Prot P42592 (YGJK_ECOLI)

Last modified June 16, 2009. Version 57. History...

Clusters with 100%, 90%, 50% identity |

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Names and origin · Protein attributes · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
Uncharacterized protein ygjK

Gene names

Name:	ygjK
Ordered Locus Names:	b3080, JW3051

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	783 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Domain	Signal
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
deoA	P07650	1	EBI-1121018,EBI-909674

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

22

Potential

Chain

761

Uncharacterized protein ygjK

PRO_0000013906

Secondary structure

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783

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P42592-1 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: AE4C37BFB78EC82B
Show »

783

88,321

        10         20         30         40         50         60 
MKIKTILTPV TCALLISFSA HAANADNYKN VINRTGAPQY MKDYDYDDHQ RFNPFFDLGA 

        70         80         90        100        110        120 
WHGHLLPDGP NTMGGFPGVA LLTEEYINFM ASNFDRLTVW QDGKKVDFTL EAYSIPGALV 

       130        140        150        160        170        180 
QKLTAKDVQV EMTLRFATPR TSLLETKITS NKPLDLVWDG ELLEKLEAKE GKPLSDKTIA 

       190        200        210        220        230        240 
GEYPDYQRKI SATRDGLKVT FGKVRATWDL LTSGESEYQV HKSLPVQTEI NGNRFTSKAH 

       250        260        270        280        290        300 
INGSTTLYTT YSHLLTAQEV SKEQMQIRDI LARPAFYLTA SQQRWEEYLK KGLTNPDATP 

       310        320        330        340        350        360 
EQTRVAVKAI ETLNGNWRSP GGAVKFNTVT PSVTGRWFSG NQTWPWDTWK QAFAMAHFNP 

       370        380        390        400        410        420 
DIAKENIRAV FSWQIQPGDS VRPQDVGFVP DLIAWNLSPE RGGDGGNWNE RNTKPSLAAW 

       430        440        450        460        470        480 
SVMEVYNVTQ DKTWVAEMYP KLVAYHDWWL RNRDHNGNGV PEYGATRDKA HNTESGEMLF 

       490        500        510        520        530        540 
TVKKGDKEET QSGLNNYARV VEKGQYDSLE IPAQVAASWE SGRDDAAVFG FIDKEQLDKY 

       550        560        570        580        590        600 
VANGGKRSDW TVKFAENRSQ DGTLLGYSLL QESVDQASYM YSDNHYLAEM ATILGKPEEA 

       610        620        630        640        650        660 
KRYRQLAQQL ADYINTCMFD PTTQFYYDVR IEDKPLANGC AGKPIVERGK GPEGWSPLFN 

       670        680        690        700        710        720 
GAATQANADA VVKVMLDPKE FNTFVPLGTA ALTNPAFGAD IYWRGRVWVD QFWFGLKGME 

       730        740        750        760        770        780 
RYGYRDDALK LADTFFRHAK GLTADGPIQE NYNPLTGAQQ GAPNFSWSAA HLYMLYNDFF 


RKQ

References

[1]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
+	Additional computationally mapped references.

Cross-references

Sequence databases

U18997 Genomic DNA. Translation: AAA57881.1.
U00096 Genomic DNA. Translation: AAC76115.1.
AP009048 Genomic DNA. Translation: BAE77130.1.

PIR

RefSeq

AP_003629.1.
NP_417551.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3C67	X-ray	1.90	A/B	23-783	[»]
3C68	X-ray	1.50	A/B	23-783	[»]
3C69	X-ray	2.00	A/B	23-783	[»]
3D3I	X-ray	1.78	A/B	23-783	[»]

ModBase

Protein-protein interaction databases

IntAct

P42592. 5 interactions.

Protein family/group databases

CAZy

GH63. Glycoside Hydrolase Family 63.

Genome annotation databases

GeneID

GenomeReviews

Gene locus JW3051 in contig AP009048_GR.
Gene locus b3080 in contig U00096_GR.

KEGG

ecj:JW3051.
eco:b3080.

Organism-specific databases

EchoBASE

EcoGene

EG12722. ygjK.

CMR

Phylogenomic databases

HOGENOM

OMA

P42592. VAVKAME.

Enzyme and pathway databases

BioCyc

EcoCyc:G7599-MON.

Family and domain databases

InterPro

IPR008902. Bac_rhamnosid.
[Graphical view]

Pfam

PF05592. Bac_rhamnosid. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

YGJK_ECOLI

Accession

Primary (citable) accession number: P42592
Secondary accession number(s): Q2M9C6

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1995
Last sequence update:	November 1, 1995
Last modified:	June 16, 2009
This is version 57 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Names and origin · Protein attributes · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents